miRNA display CGI


Results 21 - 40 of 44 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23035 5' -63 NC_005178.1 + 9582 0.66 0.252562
Target:  5'- cGCCg--CGCUGCgCUggGCGGUCGCCg -3'
miRNA:   3'- -UGGucaGCGGCG-GGuaCGCCGGUGGa -5'
23035 5' -63 NC_005178.1 + 9052 0.66 0.252562
Target:  5'- uGCCg--CGCCGCgCucGCGGUCACCg -3'
miRNA:   3'- -UGGucaGCGGCGgGuaCGCCGGUGGa -5'
23035 5' -63 NC_005178.1 + 6499 0.68 0.179993
Target:  5'- gGCCAGgucacCGCCGCCaccgugcgCAUGCGGuUgGCCa -3'
miRNA:   3'- -UGGUCa----GCGGCGG--------GUACGCC-GgUGGa -5'
23035 5' -63 NC_005178.1 + 11383 0.73 0.078691
Target:  5'- uGCCGGUCuGcCCGCCUgguggcugaucgGUGCGGCCcugcGCCUg -3'
miRNA:   3'- -UGGUCAG-C-GGCGGG------------UACGCCGG----UGGA- -5'
23035 5' -63 NC_005178.1 + 4925 0.72 0.092663
Target:  5'- gACCAGaUCGCCGaggaacuggccgCCA-GCGGCCGCCc -3'
miRNA:   3'- -UGGUC-AGCGGCg-----------GGUaCGCCGGUGGa -5'
23035 5' -63 NC_005178.1 + 13881 0.71 0.098554
Target:  5'- gGCCAG-CGCCGCCCggcGUGaacgGGCCAgCg -3'
miRNA:   3'- -UGGUCaGCGGCGGG---UACg---CCGGUgGa -5'
23035 5' -63 NC_005178.1 + 2724 0.71 0.104216
Target:  5'- uGCUGaaCGCCGCCCugggcgagGUGGCCACCa -3'
miRNA:   3'- -UGGUcaGCGGCGGGua------CGCCGGUGGa -5'
23035 5' -63 NC_005178.1 + 9525 0.7 0.119735
Target:  5'- cGCCAG-CGCCGCCUGgcGCGGgaaCGCCa -3'
miRNA:   3'- -UGGUCaGCGGCGGGUa-CGCCg--GUGGa -5'
23035 5' -63 NC_005178.1 + 9662 0.7 0.130053
Target:  5'- gGCCGGuggcuUCGCCGagCCGgccgagGCGGUCACCUu -3'
miRNA:   3'- -UGGUC-----AGCGGCg-GGUa-----CGCCGGUGGA- -5'
23035 5' -63 NC_005178.1 + 21093 0.7 0.133671
Target:  5'- cGCCAag-GUCGUCCGUGUGcGCCGCCUg -3'
miRNA:   3'- -UGGUcagCGGCGGGUACGC-CGGUGGA- -5'
23035 5' -63 NC_005178.1 + 13695 0.69 0.141187
Target:  5'- gUCAGUgGCCGCCU-UGauGCCGCCg -3'
miRNA:   3'- uGGUCAgCGGCGGGuACgcCGGUGGa -5'
23035 5' -63 NC_005178.1 + 4546 0.69 0.153187
Target:  5'- aGCCGGaCGCCGCCCA-GUGGUucgagguuUACCc -3'
miRNA:   3'- -UGGUCaGCGGCGGGUaCGCCG--------GUGGa -5'
23035 5' -63 NC_005178.1 + 31902 0.68 0.166105
Target:  5'- cGCCGGgauggCGCUGCCgGUcauCGGCCAUCg -3'
miRNA:   3'- -UGGUCa----GCGGCGGgUAc--GCCGGUGGa -5'
23035 5' -63 NC_005178.1 + 32219 0.73 0.068286
Target:  5'- gGCCAucGaCGCCGCCC-UG-GGCCGCCUg -3'
miRNA:   3'- -UGGU--CaGCGGCGGGuACgCCGGUGGA- -5'
23035 5' -63 NC_005178.1 + 35093 0.67 0.189815
Target:  5'- gACCGGacuacUCGCCGCCgAgcugccgcugGCGGCCGguCCg -3'
miRNA:   3'- -UGGUC-----AGCGGCGGgUa---------CGCCGGU--GGa -5'
23035 5' -63 NC_005178.1 + 1525 0.67 0.194387
Target:  5'- gACCguuacgaGGUCGCCGCCCGcaUGuCGcGCCuguCCg -3'
miRNA:   3'- -UGG-------UCAGCGGCGGGU--AC-GC-CGGu--GGa -5'
23035 5' -63 NC_005178.1 + 30234 0.67 0.1949
Target:  5'- aACUGGUCGUCGCaCCcauuUGaUGGCUACCa -3'
miRNA:   3'- -UGGUCAGCGGCG-GGu---AC-GCCGGUGGa -5'
23035 5' -63 NC_005178.1 + 28243 0.67 0.20543
Target:  5'- uCCAGgccgcUGCCGCCUc-GCuGGCCGCCg -3'
miRNA:   3'- uGGUCa----GCGGCGGGuaCG-CCGGUGGa -5'
23035 5' -63 NC_005178.1 + 14638 0.66 0.222144
Target:  5'- --gGGUCGCCGCgcuggaguucuaCCAggaGCGcGCCGCCg -3'
miRNA:   3'- uggUCAGCGGCG------------GGUa--CGC-CGGUGGa -5'
23035 5' -63 NC_005178.1 + 11152 0.66 0.234522
Target:  5'- cGCCcuGGcCGCCGCCCugggcuuccugguccUGUGGCC-CCg -3'
miRNA:   3'- -UGG--UCaGCGGCGGGu--------------ACGCCGGuGGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.