Results 41 - 60 of 176 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23050 | 3' | -65.2 | NC_005178.1 | + | 19742 | 0.71 | 0.085018 |
Target: 5'- cCGCCGCGCUCGaccgucgccaccaUGGCGGCaugaagaagaACCGCCu -3' miRNA: 3'- cGCGGUGCGGGC-------------GUCGCCGg---------UGGCGG- -5' |
|||||||
23050 | 3' | -65.2 | NC_005178.1 | + | 11229 | 0.71 | 0.085252 |
Target: 5'- gGgGCCACaggaccaggaaGCCCaggGCGGCGGCCAgggCGCCc -3' miRNA: 3'- -CgCGGUG-----------CGGG---CGUCGCCGGUg--GCGG- -5' |
|||||||
23050 | 3' | -65.2 | NC_005178.1 | + | 12171 | 0.71 | 0.085252 |
Target: 5'- gGCGgCGCGCCCau--CGGCCAggcCCGCCa -3' miRNA: 3'- -CGCgGUGCGGGcgucGCCGGU---GGCGG- -5' |
|||||||
23050 | 3' | -65.2 | NC_005178.1 | + | 33137 | 0.71 | 0.087144 |
Target: 5'- cCGUCGCaacccggauaaaCCCGCAGuUGGCCACCuGCCg -3' miRNA: 3'- cGCGGUGc-----------GGGCGUC-GCCGGUGG-CGG- -5' |
|||||||
23050 | 3' | -65.2 | NC_005178.1 | + | 6918 | 0.71 | 0.08981 |
Target: 5'- uCGCCGCugaggugGCCCGCAGCaGCCAgacgaaaGCCg -3' miRNA: 3'- cGCGGUG-------CGGGCGUCGcCGGUgg-----CGG- -5' |
|||||||
23050 | 3' | -65.2 | NC_005178.1 | + | 11144 | 0.71 | 0.090057 |
Target: 5'- aGCGCgGgCGCCC----UGGCCGCCGCCc -3' miRNA: 3'- -CGCGgU-GCGGGcgucGCCGGUGGCGG- -5' |
|||||||
23050 | 3' | -65.2 | NC_005178.1 | + | 32094 | 0.71 | 0.092555 |
Target: 5'- -gGCUAUGCCCGUuucgcgaauGGuCGGCCggGCCGUCg -3' miRNA: 3'- cgCGGUGCGGGCG---------UC-GCCGG--UGGCGG- -5' |
|||||||
23050 | 3' | -65.2 | NC_005178.1 | + | 28384 | 0.7 | 0.094859 |
Target: 5'- -aGCCACuCCCGCcaccagccacuccAGCGGCC-CCGgCa -3' miRNA: 3'- cgCGGUGcGGGCG-------------UCGCCGGuGGCgG- -5' |
|||||||
23050 | 3' | -65.2 | NC_005178.1 | + | 34586 | 0.7 | 0.095118 |
Target: 5'- aGCGCCGCcCCUGCGacGCaGCgACCGCg -3' miRNA: 3'- -CGCGGUGcGGGCGU--CGcCGgUGGCGg -5' |
|||||||
23050 | 3' | -65.2 | NC_005178.1 | + | 6205 | 0.7 | 0.095118 |
Target: 5'- uGUGCUA-GCCuuCGCGGC-GCUACCGCCu -3' miRNA: 3'- -CGCGGUgCGG--GCGUCGcCGGUGGCGG- -5' |
|||||||
23050 | 3' | -65.2 | NC_005178.1 | + | 10390 | 0.7 | 0.095118 |
Target: 5'- cGCGCUucgccccuccGCGCCCgGCccuCGGCUAuCCGCCa -3' miRNA: 3'- -CGCGG----------UGCGGG-CGuc-GCCGGU-GGCGG- -5' |
|||||||
23050 | 3' | -65.2 | NC_005178.1 | + | 11752 | 0.7 | 0.095118 |
Target: 5'- aUGCCACGgCCGUGGCccgaGCCAuggggguuCCGCCg -3' miRNA: 3'- cGCGGUGCgGGCGUCGc---CGGU--------GGCGG- -5' |
|||||||
23050 | 3' | -65.2 | NC_005178.1 | + | 16417 | 0.7 | 0.100448 |
Target: 5'- uGCGCCAUGaCCUacugGCuGCGGaugcccgccagcUCGCCGCCa -3' miRNA: 3'- -CGCGGUGC-GGG----CGuCGCC------------GGUGGCGG- -5' |
|||||||
23050 | 3' | -65.2 | NC_005178.1 | + | 30671 | 0.7 | 0.103217 |
Target: 5'- gGCGguuCCGCGCUggaGCAGCGGguaCACgCGCCa -3' miRNA: 3'- -CGC---GGUGCGGg--CGUCGCCg--GUG-GCGG- -5' |
|||||||
23050 | 3' | -65.2 | NC_005178.1 | + | 17053 | 0.7 | 0.103217 |
Target: 5'- cGgGCCAUcUUCGCcauGCGGCCggagGCCGCCa -3' miRNA: 3'- -CgCGGUGcGGGCGu--CGCCGG----UGGCGG- -5' |
|||||||
23050 | 3' | -65.2 | NC_005178.1 | + | 16082 | 0.7 | 0.103217 |
Target: 5'- cGCGCCACGUaucccgagCGCGaacGCGGCUugUGCa -3' miRNA: 3'- -CGCGGUGCGg-------GCGU---CGCCGGugGCGg -5' |
|||||||
23050 | 3' | -65.2 | NC_005178.1 | + | 13137 | 0.7 | 0.106058 |
Target: 5'- aGCGCCugGCCaGCuucauccgugAGCGGUUcCCGCa -3' miRNA: 3'- -CGCGGugCGGgCG----------UCGCCGGuGGCGg -5' |
|||||||
23050 | 3' | -65.2 | NC_005178.1 | + | 21079 | 0.7 | 0.108973 |
Target: 5'- -gGUCAgGCCgGUGGCGGUgcUGCCGCCc -3' miRNA: 3'- cgCGGUgCGGgCGUCGCCG--GUGGCGG- -5' |
|||||||
23050 | 3' | -65.2 | NC_005178.1 | + | 5248 | 0.7 | 0.108973 |
Target: 5'- cGCGUCGCGguuaaCCUggaGCAGuUGGCCgagGCCGCCa -3' miRNA: 3'- -CGCGGUGC-----GGG---CGUC-GCCGG---UGGCGG- -5' |
|||||||
23050 | 3' | -65.2 | NC_005178.1 | + | 20996 | 0.7 | 0.108973 |
Target: 5'- aCGCUACcggGUUCGCcgugGGCGGCagCACCGCCa -3' miRNA: 3'- cGCGGUG---CGGGCG----UCGCCG--GUGGCGG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home