miRNA display CGI


Results 1 - 20 of 44 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23107 5' -60.6 NC_005178.1 + 6148 0.66 0.33813
Target:  5'- aGCgCCGcGAaGGCUAGCAC-AAGCCAc -3'
miRNA:   3'- gUG-GGC-CUgCCGGUCGUGcUUCGGUa -5'
23107 5' -60.6 NC_005178.1 + 17161 0.66 0.33813
Target:  5'- uCGCCUGGGCguccagGGCCGGCuucaggGCGGucagGGCCGc -3'
miRNA:   3'- -GUGGGCCUG------CCGGUCG------UGCU----UCGGUa -5'
23107 5' -60.6 NC_005178.1 + 27449 0.66 0.33813
Target:  5'- cCACCaCGG-CGGcCCAGCGCaucAGCCu- -3'
miRNA:   3'- -GUGG-GCCuGCC-GGUCGUGcu-UCGGua -5'
23107 5' -60.6 NC_005178.1 + 28726 0.66 0.33
Target:  5'- aCACCCGGcACGcGCCGG-GCGAcuuucuuGCCGa -3'
miRNA:   3'- -GUGGGCC-UGC-CGGUCgUGCUu------CGGUa -5'
23107 5' -60.6 NC_005178.1 + 3924 0.66 0.314176
Target:  5'- aGCCUGGGC-GCU-GCACGAAGCgGa -3'
miRNA:   3'- gUGGGCCUGcCGGuCGUGCUUCGgUa -5'
23107 5' -60.6 NC_005178.1 + 22471 0.66 0.314176
Target:  5'- cUugCCGGACGacGUCGGCGgCGAgggugAGCCGUc -3'
miRNA:   3'- -GugGGCCUGC--CGGUCGU-GCU-----UCGGUA- -5'
23107 5' -60.6 NC_005178.1 + 7748 0.66 0.314176
Target:  5'- gCGCCUGG-CGGuccuCCAGgGCGGAGuCCAg -3'
miRNA:   3'- -GUGGGCCuGCC----GGUCgUGCUUC-GGUa -5'
23107 5' -60.6 NC_005178.1 + 5950 0.66 0.314176
Target:  5'- gGCCUGGACGGggcggaCCAGguCcAGGCCGg -3'
miRNA:   3'- gUGGGCCUGCC------GGUCguGcUUCGGUa -5'
23107 5' -60.6 NC_005178.1 + 17893 0.66 0.298933
Target:  5'- gACCCGGuAC-GCCAGCGCGccuGGCa-- -3'
miRNA:   3'- gUGGGCC-UGcCGGUCGUGCu--UCGgua -5'
23107 5' -60.6 NC_005178.1 + 26329 0.66 0.298933
Target:  5'- uCGCCagGGcgaACGGCacuCAGUAUGAGGCCGUg -3'
miRNA:   3'- -GUGGg-CC---UGCCG---GUCGUGCUUCGGUA- -5'
23107 5' -60.6 NC_005178.1 + 32772 0.66 0.298933
Target:  5'- gAUCCaGGCGGCCGaaacggauuuGC-CGAAGCCGg -3'
miRNA:   3'- gUGGGcCUGCCGGU----------CGuGCUUCGGUa -5'
23107 5' -60.6 NC_005178.1 + 23675 0.66 0.298933
Target:  5'- uCACgCCGGGCGGCgcuggccuuCGGguCGggGUCGa -3'
miRNA:   3'- -GUG-GGCCUGCCG---------GUCguGCuuCGGUa -5'
23107 5' -60.6 NC_005178.1 + 21647 0.66 0.291528
Target:  5'- -uCCCGGACGaGCUGGUcuAUGAAGCgGUc -3'
miRNA:   3'- guGGGCCUGC-CGGUCG--UGCUUCGgUA- -5'
23107 5' -60.6 NC_005178.1 + 33808 0.67 0.277152
Target:  5'- gGCCCGG-CGcGUCAGCuuGAagguGGCCAg -3'
miRNA:   3'- gUGGGCCuGC-CGGUCGugCU----UCGGUa -5'
23107 5' -60.6 NC_005178.1 + 32612 0.67 0.270178
Target:  5'- ---gCGGGCGGCC-GCugGcGGCCAg -3'
miRNA:   3'- guggGCCUGCCGGuCGugCuUCGGUa -5'
23107 5' -60.6 NC_005178.1 + 14860 0.67 0.270178
Target:  5'- gACCCGGcgauccagcuCGGCCuGgGCGAGGUCGc -3'
miRNA:   3'- gUGGGCCu---------GCCGGuCgUGCUUCGGUa -5'
23107 5' -60.6 NC_005178.1 + 24593 0.67 0.266062
Target:  5'- gGCCUGGAacugggucaccaggcCGGCCAGCACcuggcgcGCCAc -3'
miRNA:   3'- gUGGGCCU---------------GCCGGUCGUGcuu----CGGUa -5'
23107 5' -60.6 NC_005178.1 + 21342 0.67 0.263347
Target:  5'- uGCCCGcuGCGGCaUGGC-CGAGGCCGg -3'
miRNA:   3'- gUGGGCc-UGCCG-GUCGuGCUUCGGUa -5'
23107 5' -60.6 NC_005178.1 + 9173 0.67 0.250105
Target:  5'- -cCCUGGACcuGGCCGccaccCGCGAAGCCGa -3'
miRNA:   3'- guGGGCCUG--CCGGUc----GUGCUUCGGUa -5'
23107 5' -60.6 NC_005178.1 + 18690 0.67 0.250105
Target:  5'- -uCCCGGuccucagaaACGGCCAGCuc-AAGCCAa -3'
miRNA:   3'- guGGGCC---------UGCCGGUCGugcUUCGGUa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.