miRNA display CGI


Results 1 - 20 of 115 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23130 5' -63.1 NC_005178.1 + 18897 0.66 0.272158
Target:  5'- -cGCCGggauagucaccuuacGGCCucGCCCAgccUGaCCGCCCa -3'
miRNA:   3'- ccCGGU---------------CCGGuuCGGGUa--GC-GGCGGG- -5'
23130 5' -63.1 NC_005178.1 + 31489 0.66 0.272158
Target:  5'- gGGGC--GGCCAccccucGGCaCCGUCuucaucacggcuucaGCCGCCUg -3'
miRNA:   3'- -CCCGguCCGGU------UCG-GGUAG---------------CGGCGGG- -5'
23130 5' -63.1 NC_005178.1 + 28121 0.66 0.269467
Target:  5'- cGGCUAGGCCGGGgCgGUU-UCGCUCa -3'
miRNA:   3'- cCCGGUCCGGUUCgGgUAGcGGCGGG- -5'
23130 5' -63.1 NC_005178.1 + 34984 0.66 0.269467
Target:  5'- uGGCCGcgcuGGCCGaggcgccgaccAGCCUGUCGCagaGCUa -3'
miRNA:   3'- cCCGGU----CCGGU-----------UCGGGUAGCGg--CGGg -5'
23130 5' -63.1 NC_005178.1 + 25412 0.66 0.269467
Target:  5'- cGGCCcGGaUCAAGgCgaugGUCGCCGCCUc -3'
miRNA:   3'- cCCGGuCC-GGUUCgGg---UAGCGGCGGG- -5'
23130 5' -63.1 NC_005178.1 + 11144 0.66 0.269467
Target:  5'- -aGCgCGGGC---GCCCuggcCGCCGCCCu -3'
miRNA:   3'- ccCG-GUCCGguuCGGGua--GCGGCGGG- -5'
23130 5' -63.1 NC_005178.1 + 6879 0.66 0.269467
Target:  5'- cGGCCugGGGCgAGcguccGCCCGUCuUCGUCCa -3'
miRNA:   3'- cCCGG--UCCGgUU-----CGGGUAGcGGCGGG- -5'
23130 5' -63.1 NC_005178.1 + 18460 0.66 0.269467
Target:  5'- gGGGCCGGGau-GGCCUcaGUUGa-GCCCc -3'
miRNA:   3'- -CCCGGUCCgguUCGGG--UAGCggCGGG- -5'
23130 5' -63.1 NC_005178.1 + 20482 0.66 0.262832
Target:  5'- -cGCCAccGCCcAGCUgaagGUCGCCGCCCc -3'
miRNA:   3'- ccCGGUc-CGGuUCGGg---UAGCGGCGGG- -5'
23130 5' -63.1 NC_005178.1 + 25879 0.66 0.262832
Target:  5'- -cGCCAGGCCAugcGGCa-GUUGCCGgCg -3'
miRNA:   3'- ccCGGUCCGGU---UCGggUAGCGGCgGg -5'
23130 5' -63.1 NC_005178.1 + 7272 0.66 0.262832
Target:  5'- uGGcCCAGaGCCugcGCaCCuucaacgaCGCCGCCCg -3'
miRNA:   3'- cCC-GGUC-CGGuu-CG-GGua------GCGGCGGG- -5'
23130 5' -63.1 NC_005178.1 + 17196 0.66 0.262832
Target:  5'- aGGGCCGcaauGGCCucuGCCUcgGUCG-UGCCUu -3'
miRNA:   3'- -CCCGGU----CCGGuu-CGGG--UAGCgGCGGG- -5'
23130 5' -63.1 NC_005178.1 + 2725 0.66 0.262832
Target:  5'- uGGuGgCGGcGCCAcGCCgGUUGUCGCCg -3'
miRNA:   3'- -CC-CgGUC-CGGUuCGGgUAGCGGCGGg -5'
23130 5' -63.1 NC_005178.1 + 13240 0.66 0.262832
Target:  5'- gGGGCCGGcGUCGgcAGaCCCAgcaguuggaccUCGCCGUa- -3'
miRNA:   3'- -CCCGGUC-CGGU--UC-GGGU-----------AGCGGCGgg -5'
23130 5' -63.1 NC_005178.1 + 33144 0.66 0.256331
Target:  5'- cGGUCGGGUgcGGUUCAUCGauCCGCUCg -3'
miRNA:   3'- cCCGGUCCGguUCGGGUAGC--GGCGGG- -5'
23130 5' -63.1 NC_005178.1 + 1669 0.66 0.256331
Target:  5'- gGGGCgccguugaucagUAGGCCAguauucGGcCCCAUCGUCagGCUCa -3'
miRNA:   3'- -CCCG------------GUCCGGU------UC-GGGUAGCGG--CGGG- -5'
23130 5' -63.1 NC_005178.1 + 24603 0.66 0.249962
Target:  5'- uGGGucaCCAGGCCGgccAGCaCCuggcgCGCCacguccuccaGCCCa -3'
miRNA:   3'- -CCC---GGUCCGGU---UCG-GGua---GCGG----------CGGG- -5'
23130 5' -63.1 NC_005178.1 + 36040 0.66 0.249962
Target:  5'- gGGGCCGGGgCGAa-CCAgaacCGCUugGCCCg -3'
miRNA:   3'- -CCCGGUCCgGUUcgGGUa---GCGG--CGGG- -5'
23130 5' -63.1 NC_005178.1 + 9987 0.66 0.249962
Target:  5'- aGGCCGGGCgAcGCCaaaagUGCCGCa- -3'
miRNA:   3'- cCCGGUCCGgUuCGGgua--GCGGCGgg -5'
23130 5' -63.1 NC_005178.1 + 17819 0.66 0.247451
Target:  5'- aGGuGCUguacaacaAGGCCGAGCgCAcccugggagcgccUGCCGCCCu -3'
miRNA:   3'- -CC-CGG--------UCCGGUUCGgGUa------------GCGGCGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.