miRNA display CGI


Results 21 - 40 of 89 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23150 5' -61 NC_005178.1 + 27455 0.66 0.31963
Target:  5'- cGGCgGCCCAGCgcaucaGCC-UGGAccagaagauCGCCg -3'
miRNA:   3'- -CCGgCGGGUUGac----CGGuACCU---------GCGGa -5'
23150 5' -61 NC_005178.1 + 26707 0.76 0.062617
Target:  5'- cGuuGCCgGGgUGGCCAaGGGCGCCUg -3'
miRNA:   3'- cCggCGGgUUgACCGGUaCCUGCGGA- -5'
23150 5' -61 NC_005178.1 + 26607 1.09 0.00015
Target:  5'- gGGCCGCCCAACUGGCCAUGGACGCCUa -3'
miRNA:   3'- -CCGGCGGGUUGACCGGUACCUGCGGA- -5'
23150 5' -61 NC_005178.1 + 26397 0.71 0.134405
Target:  5'- aGGaaGCCCAggGCggcGGCCA-GGGCGCCc -3'
miRNA:   3'- -CCggCGGGU--UGa--CCGGUaCCUGCGGa -5'
23150 5' -61 NC_005178.1 + 25919 0.7 0.167321
Target:  5'- uGGUCa-CCAGcCUGGCCAgcgGGAUGCCa -3'
miRNA:   3'- -CCGGcgGGUU-GACCGGUa--CCUGCGGa -5'
23150 5' -61 NC_005178.1 + 25830 0.67 0.289599
Target:  5'- cGGCaCGUCUGACgccaUGGCCGUGGcCGgCa -3'
miRNA:   3'- -CCG-GCGGGUUG----ACCGGUACCuGCgGa -5'
23150 5' -61 NC_005178.1 + 25443 0.67 0.255232
Target:  5'- cGGCgCGCCCAuc-GGCCA-GGccCGCCa -3'
miRNA:   3'- -CCG-GCGGGUugaCCGGUaCCu-GCGGa -5'
23150 5' -61 NC_005178.1 + 25409 0.7 0.154205
Target:  5'- aGGCgGCCCGGaucaaGGCgAUGGuCGCCg -3'
miRNA:   3'- -CCGgCGGGUUga---CCGgUACCuGCGGa -5'
23150 5' -61 NC_005178.1 + 25181 0.72 0.12716
Target:  5'- aGGCCGCCgGuAgUGGCC-UGGGCGgCa -3'
miRNA:   3'- -CCGGCGGgU-UgACCGGuACCUGCgGa -5'
23150 5' -61 NC_005178.1 + 23439 0.7 0.167321
Target:  5'- cGCCgacGCCCAggGCgacGGCCA-GGGCGCCc -3'
miRNA:   3'- cCGG---CGGGU--UGa--CCGGUaCCUGCGGa -5'
23150 5' -61 NC_005178.1 + 22856 0.68 0.242451
Target:  5'- gGGCUGCCCAuCcGGCCAgcagaUGaucGCGCCg -3'
miRNA:   3'- -CCGGCGGGUuGaCCGGU-----ACc--UGCGGa -5'
23150 5' -61 NC_005178.1 + 22597 0.66 0.31963
Target:  5'- uGGCgGCCuCGACcacGuCCA-GGACGCCUg -3'
miRNA:   3'- -CCGgCGG-GUUGac-C-GGUaCCUGCGGA- -5'
23150 5' -61 NC_005178.1 + 22549 0.72 0.116969
Target:  5'- gGGaCCGCCC--CUGGCCAcGGAUgGCCa -3'
miRNA:   3'- -CC-GGCGGGuuGACCGGUaCCUG-CGGa -5'
23150 5' -61 NC_005178.1 + 21192 0.67 0.282446
Target:  5'- cGCCGCCCGacucGCUGGUCuggcUGGugagcgUGCCg -3'
miRNA:   3'- cCGGCGGGU----UGACCGGu---ACCu-----GCGGa -5'
23150 5' -61 NC_005178.1 + 21098 0.69 0.19141
Target:  5'- aGGUCGUCCGugUGcGCCGccUGaACGCCUu -3'
miRNA:   3'- -CCGGCGGGUugAC-CGGU--ACcUGCGGA- -5'
23150 5' -61 NC_005178.1 + 20821 0.66 0.31963
Target:  5'- gGGCCaGCgCAGCgaugcgaGGaCCA-GGGCGCCg -3'
miRNA:   3'- -CCGG-CGgGUUGa------CC-GGUaCCUGCGGa -5'
23150 5' -61 NC_005178.1 + 20805 0.7 0.167321
Target:  5'- aGGCCGCCCucgcgguuuGCUcGGCCAUGcaGAUcaaGCCg -3'
miRNA:   3'- -CCGGCGGGu--------UGA-CCGGUAC--CUG---CGGa -5'
23150 5' -61 NC_005178.1 + 20755 0.67 0.268561
Target:  5'- gGGCCGgCaGGCUGGCCAgcaccUGGuccaGCGCUUc -3'
miRNA:   3'- -CCGGCgGgUUGACCGGU-----ACC----UGCGGA- -5'
23150 5' -61 NC_005178.1 + 20635 0.66 0.31963
Target:  5'- uGUCGUCCAuauccgggaauGCcucGGCCA-GGGCGCCg -3'
miRNA:   3'- cCGGCGGGU-----------UGa--CCGGUaCCUGCGGa -5'
23150 5' -61 NC_005178.1 + 20503 0.7 0.181428
Target:  5'- cGCCGCCCccgguaaccccGACccGGCgaaGUGGGCGCCc -3'
miRNA:   3'- cCGGCGGG-----------UUGa-CCGg--UACCUGCGGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.