miRNA display CGI


Results 1 - 20 of 104 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23249 5' -61.5 NC_005259.1 + 57961 0.66 0.490189
Target:  5'- gGCCCccauggucgaGGUCGCCGgGaucgugacCCCGGUCgaGCCa -3'
miRNA:   3'- -UGGG----------CCGGUGGUgU--------GGGCUAGgaCGG- -5'
23249 5' -61.5 NC_005259.1 + 17122 0.66 0.490189
Target:  5'- cGCCCGauuCCAagGCACCCGucgaCCUGCg -3'
miRNA:   3'- -UGGGCc--GGUggUGUGGGCua--GGACGg -5'
23249 5' -61.5 NC_005259.1 + 28793 0.66 0.490189
Target:  5'- -gCCGGUCGCUACGCCaucgacaccaCGAUCCacGCg -3'
miRNA:   3'- ugGGCCGGUGGUGUGG----------GCUAGGa-CGg -5'
23249 5' -61.5 NC_005259.1 + 9290 0.66 0.490189
Target:  5'- -gCgGuGCCGCCACGCUCG-UCCcguaGCCg -3'
miRNA:   3'- ugGgC-CGGUGGUGUGGGCuAGGa---CGG- -5'
23249 5' -61.5 NC_005259.1 + 30165 0.66 0.490189
Target:  5'- cGCCUacaGGCCGCCACAgCCG--CCcGCa -3'
miRNA:   3'- -UGGG---CCGGUGGUGUgGGCuaGGaCGg -5'
23249 5' -61.5 NC_005259.1 + 35462 0.66 0.48055
Target:  5'- -aCCGGCacCGCCAgcacCGCCCGGUag-GCCg -3'
miRNA:   3'- ugGGCCG--GUGGU----GUGGGCUAggaCGG- -5'
23249 5' -61.5 NC_005259.1 + 15074 0.66 0.48055
Target:  5'- cACCCuGGCC-CUugAgCCGGUCaugcGCCg -3'
miRNA:   3'- -UGGG-CCGGuGGugUgGGCUAGga--CGG- -5'
23249 5' -61.5 NC_005259.1 + 7037 0.66 0.48055
Target:  5'- cCCCGGCgggguuuuuCGuuGCGCgaGAUCCUGUCg -3'
miRNA:   3'- uGGGCCG---------GUggUGUGggCUAGGACGG- -5'
23249 5' -61.5 NC_005259.1 + 67791 0.66 0.48055
Target:  5'- gACCUuguuGG-CACCGCgugcgagcuugaGCCCGAUCUUGUCc -3'
miRNA:   3'- -UGGG----CCgGUGGUG------------UGGGCUAGGACGG- -5'
23249 5' -61.5 NC_005259.1 + 54538 0.66 0.48055
Target:  5'- uAUCCGGCCcaGCCACACagauUGAaCUUGCg -3'
miRNA:   3'- -UGGGCCGG--UGGUGUGg---GCUaGGACGg -5'
23249 5' -61.5 NC_005259.1 + 41929 0.66 0.471005
Target:  5'- gACCCGGUagaACguCGCuuGGUUgugCUGCCg -3'
miRNA:   3'- -UGGGCCGg--UGguGUGggCUAG---GACGG- -5'
23249 5' -61.5 NC_005259.1 + 33233 0.66 0.471005
Target:  5'- -gCCGGUCACCGCguacguGCCaGAU-CUGCCc -3'
miRNA:   3'- ugGGCCGGUGGUG------UGGgCUAgGACGG- -5'
23249 5' -61.5 NC_005259.1 + 67743 0.66 0.471005
Target:  5'- -aCCGGCgGCCACuaggccgcCCCGGccaCCgGCCa -3'
miRNA:   3'- ugGGCCGgUGGUGu-------GGGCUa--GGaCGG- -5'
23249 5' -61.5 NC_005259.1 + 61378 0.66 0.471005
Target:  5'- cACCUGcuGCCA-CACGCCCGAUgCcGUCg -3'
miRNA:   3'- -UGGGC--CGGUgGUGUGGGCUAgGaCGG- -5'
23249 5' -61.5 NC_005259.1 + 21818 0.66 0.471005
Target:  5'- -gCCGGUCACCACACCaacaCCaGCa -3'
miRNA:   3'- ugGGCCGGUGGUGUGGgcuaGGaCGg -5'
23249 5' -61.5 NC_005259.1 + 15043 0.66 0.471005
Target:  5'- -aCCGGCaggguGCCAUGgCCGAUaCCgugGCCa -3'
miRNA:   3'- ugGGCCGg----UGGUGUgGGCUA-GGa--CGG- -5'
23249 5' -61.5 NC_005259.1 + 36970 0.66 0.471005
Target:  5'- cGCCuCGGCCcgcACCGCcgaacgucGCaCCGuUCUUGCCc -3'
miRNA:   3'- -UGG-GCCGG---UGGUG--------UG-GGCuAGGACGG- -5'
23249 5' -61.5 NC_005259.1 + 12161 0.66 0.461556
Target:  5'- cGCCgaCGG-CACCGCcCUCGGUcgaaCCUGCCg -3'
miRNA:   3'- -UGG--GCCgGUGGUGuGGGCUA----GGACGG- -5'
23249 5' -61.5 NC_005259.1 + 10870 0.66 0.457805
Target:  5'- gAUCCGGCCAagcgcaugagcaGCACCCGGcCCcGUCg -3'
miRNA:   3'- -UGGGCCGGUgg----------UGUGGGCUaGGaCGG- -5'
23249 5' -61.5 NC_005259.1 + 1141 0.66 0.452209
Target:  5'- cGCCCcaacaggaaGGaCCACCACcaugUUCGAUCCcGCCg -3'
miRNA:   3'- -UGGG---------CC-GGUGGUGu---GGGCUAGGaCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.