miRNA display CGI


Results 41 - 60 of 230 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23256 3' -64.7 NC_005259.1 + 52207 0.7 0.180375
Target:  5'- gGCUCAUgGGCACCGCguuccGCGCCcGCUg -3'
miRNA:   3'- gCGGGUGgCCGUGGCGgu---CGUGG-CGG- -5'
23256 3' -64.7 NC_005259.1 + 52135 0.76 0.067287
Target:  5'- cCGCCguCCGGCACCucGCCgaggcaGGCAgCGCCg -3'
miRNA:   3'- -GCGGguGGCCGUGG--CGG------UCGUgGCGG- -5'
23256 3' -64.7 NC_005259.1 + 51729 0.68 0.241402
Target:  5'- gGCCCACaugauGGcCACCGCCAcgcucucggcagcGUugCGCUc -3'
miRNA:   3'- gCGGGUGg----CC-GUGGCGGU-------------CGugGCGG- -5'
23256 3' -64.7 NC_005259.1 + 51473 0.72 0.122864
Target:  5'- uGCCC-UCGGCgacccacACCGCCGGggauaggucgaCGCCGCCg -3'
miRNA:   3'- gCGGGuGGCCG-------UGGCGGUC-----------GUGGCGG- -5'
23256 3' -64.7 NC_005259.1 + 51359 0.75 0.076856
Target:  5'- uGCCCGgUGGCACCGgCA-CACCGCg -3'
miRNA:   3'- gCGGGUgGCCGUGGCgGUcGUGGCGg -5'
23256 3' -64.7 NC_005259.1 + 50534 0.66 0.327453
Target:  5'- gCGCUCGCCucgGGCgaggaaACCGCaCGGCagaauGCUGCCc -3'
miRNA:   3'- -GCGGGUGG---CCG------UGGCG-GUCG-----UGGCGG- -5'
23256 3' -64.7 NC_005259.1 + 50387 0.68 0.247838
Target:  5'- gGCCCACgugucgCGGC-UCGCCgAGCG-CGCCg -3'
miRNA:   3'- gCGGGUG------GCCGuGGCGG-UCGUgGCGG- -5'
23256 3' -64.7 NC_005259.1 + 50192 0.7 0.194334
Target:  5'- uGCUCGCCcGacucCCGCUcaAGCGCCGCCu -3'
miRNA:   3'- gCGGGUGGcCgu--GGCGG--UCGUGGCGG- -5'
23256 3' -64.7 NC_005259.1 + 50090 0.71 0.15471
Target:  5'- aGCUCGCCGaugguGCGCCcgagguuGCCcguacgcacgGGCACCGCCa -3'
miRNA:   3'- gCGGGUGGC-----CGUGG-------CGG----------UCGUGGCGG- -5'
23256 3' -64.7 NC_005259.1 + 49445 0.66 0.342431
Target:  5'- cCGCCUuggUCGGCAgCCGgaugcCCAGCAggUCGCCc -3'
miRNA:   3'- -GCGGGu--GGCCGU-GGC-----GGUCGU--GGCGG- -5'
23256 3' -64.7 NC_005259.1 + 48596 0.67 0.278241
Target:  5'- aGCUugucgagCGCgGGCgcuACCGCCGugcGCACUGCCu -3'
miRNA:   3'- gCGG-------GUGgCCG---UGGCGGU---CGUGGCGG- -5'
23256 3' -64.7 NC_005259.1 + 48404 0.71 0.155103
Target:  5'- aCGCCCGCCGucgagucaccGCgACCGCCAcCACCGa- -3'
miRNA:   3'- -GCGGGUGGC----------CG-UGGCGGUcGUGGCgg -5'
23256 3' -64.7 NC_005259.1 + 48173 0.7 0.186776
Target:  5'- cCGCCC-CCGcCGCCGCCGGgugucggaccgggcaUGCCGUCg -3'
miRNA:   3'- -GCGGGuGGCcGUGGCGGUC---------------GUGGCGG- -5'
23256 3' -64.7 NC_005259.1 + 48098 0.7 0.177692
Target:  5'- aGCCCGacggguCCGGUcaggaaaccgagcacACCGCCucgacCACCGCCg -3'
miRNA:   3'- gCGGGU------GGCCG---------------UGGCGGuc---GUGGCGG- -5'
23256 3' -64.7 NC_005259.1 + 48029 0.71 0.16151
Target:  5'- gCGCCCAcgauguugaccaccCCGGUggccacgGCgGgUAGCGCCGCCg -3'
miRNA:   3'- -GCGGGU--------------GGCCG-------UGgCgGUCGUGGCGG- -5'
23256 3' -64.7 NC_005259.1 + 47943 0.71 0.147417
Target:  5'- aGCCgAUgaCGGCggugccgaugGCCGCC-GCGCCGCCc -3'
miRNA:   3'- gCGGgUG--GCCG----------UGGCGGuCGUGGCGG- -5'
23256 3' -64.7 NC_005259.1 + 47318 0.66 0.334881
Target:  5'- gGCCUgACCGGCgGCCuugGUCAGCcCCGUg -3'
miRNA:   3'- gCGGG-UGGCCG-UGG---CGGUCGuGGCGg -5'
23256 3' -64.7 NC_005259.1 + 47277 0.66 0.350104
Target:  5'- aGCgCACCGaGCagACCGCCGuCGCCGg- -3'
miRNA:   3'- gCGgGUGGC-CG--UGGCGGUcGUGGCgg -5'
23256 3' -64.7 NC_005259.1 + 46939 0.76 0.067287
Target:  5'- uGCCCGCC-GCGCCGCCgaccgcguugAGCuuguuggccacGCCGCCg -3'
miRNA:   3'- gCGGGUGGcCGUGGCGG----------UCG-----------UGGCGG- -5'
23256 3' -64.7 NC_005259.1 + 46904 0.88 0.007833
Target:  5'- gCGCCCGCCGaGCAguCCGCguGCGCCGCCg -3'
miRNA:   3'- -GCGGGUGGC-CGU--GGCGguCGUGGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.