miRNA display CGI


Results 1 - 20 of 77 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23261 3' -58.1 NC_005259.1 + 65161 0.66 0.650795
Target:  5'- aACGGGC-C-AugGCCCGCcgggucaagGCGCuGGUCg -3'
miRNA:   3'- -UGCUCGuGcUugUGGGCG---------UGCG-CCAG- -5'
23261 3' -58.1 NC_005259.1 + 32855 0.66 0.640176
Target:  5'- cUGAG-ACGAACuugACCucgaCGCGCGCGGUg -3'
miRNA:   3'- uGCUCgUGCUUG---UGG----GCGUGCGCCAg -5'
23261 3' -58.1 NC_005259.1 + 57305 0.66 0.639114
Target:  5'- cACGA-CAuCGAGCACCgGCGgugucggUGUGGUCa -3'
miRNA:   3'- -UGCUcGU-GCUUGUGGgCGU-------GCGCCAG- -5'
23261 3' -58.1 NC_005259.1 + 57539 0.66 0.639114
Target:  5'- gGCGAugGCGuccucggUGAACAUCCGCGuaaaGCGGUUg -3'
miRNA:   3'- -UGCU--CGU-------GCUUGUGGGCGUg---CGCCAG- -5'
23261 3' -58.1 NC_005259.1 + 26501 0.66 0.629551
Target:  5'- cGCGAGCuCGc-CGCCCGgcgagaagaGCGCGGUg -3'
miRNA:   3'- -UGCUCGuGCuuGUGGGCg--------UGCGCCAg -5'
23261 3' -58.1 NC_005259.1 + 64268 0.66 0.629551
Target:  5'- cGCGAGCACGAG--UUCGCGCGCc--- -3'
miRNA:   3'- -UGCUCGUGCUUguGGGCGUGCGccag -5'
23261 3' -58.1 NC_005259.1 + 61254 0.66 0.629551
Target:  5'- uCGGGUGCGAGCAUgcgaCCGU-CGCuGGUCu -3'
miRNA:   3'- uGCUCGUGCUUGUG----GGCGuGCG-CCAG- -5'
23261 3' -58.1 NC_005259.1 + 56360 0.66 0.629551
Target:  5'- uCGGGCACGcgguACAgCCGU-CGCGGg- -3'
miRNA:   3'- uGCUCGUGCu---UGUgGGCGuGCGCCag -5'
23261 3' -58.1 NC_005259.1 + 60482 0.66 0.618928
Target:  5'- --aGGCACGcaccAGCGCCCaGCACGCGccgguguuGUCg -3'
miRNA:   3'- ugcUCGUGC----UUGUGGG-CGUGCGC--------CAG- -5'
23261 3' -58.1 NC_005259.1 + 13247 0.66 0.608316
Target:  5'- -aGGGC-CGAGCACCCG---GCGGUa -3'
miRNA:   3'- ugCUCGuGCUUGUGGGCgugCGCCAg -5'
23261 3' -58.1 NC_005259.1 + 58767 0.66 0.597723
Target:  5'- aACGAcGCuGCGGGCGCUgUGCGC-CGGUCg -3'
miRNA:   3'- -UGCU-CG-UGCUUGUGG-GCGUGcGCCAG- -5'
23261 3' -58.1 NC_005259.1 + 14505 0.66 0.597723
Target:  5'- uGCccGCAUGcACACCggcgaGCACGCGGUg -3'
miRNA:   3'- -UGcuCGUGCuUGUGGg----CGUGCGCCAg -5'
23261 3' -58.1 NC_005259.1 + 8645 0.67 0.587157
Target:  5'- gGCGGGCACGAggcuguggucggGCugCC--ACGCGGg- -3'
miRNA:   3'- -UGCUCGUGCU------------UGugGGcgUGCGCCag -5'
23261 3' -58.1 NC_005259.1 + 45473 0.67 0.587157
Target:  5'- aACGGGC-CGAGCuucuGgCCGCugGUGGcCu -3'
miRNA:   3'- -UGCUCGuGCUUG----UgGGCGugCGCCaG- -5'
23261 3' -58.1 NC_005259.1 + 1280 0.67 0.587157
Target:  5'- aACGuccuGCACG-AC-CCCGaggucgagcucUACGCGGUCg -3'
miRNA:   3'- -UGCu---CGUGCuUGuGGGC-----------GUGCGCCAG- -5'
23261 3' -58.1 NC_005259.1 + 50241 0.67 0.580834
Target:  5'- cGCGGGCGCGGAUcguggccaacgggcuACUCGCuguCGuCGGUg -3'
miRNA:   3'- -UGCUCGUGCUUG---------------UGGGCGu--GC-GCCAg -5'
23261 3' -58.1 NC_005259.1 + 65327 0.67 0.576627
Target:  5'- -aGAGUucgauguCGAGCugCUGUGCGCGGg- -3'
miRNA:   3'- ugCUCGu------GCUUGugGGCGUGCGCCag -5'
23261 3' -58.1 NC_005259.1 + 42169 0.67 0.576627
Target:  5'- gACGAGCAgcacguCGAACuguAUCCGCuGCGCGccGUCg -3'
miRNA:   3'- -UGCUCGU------GCUUG---UGGGCG-UGCGC--CAG- -5'
23261 3' -58.1 NC_005259.1 + 48451 0.67 0.576627
Target:  5'- aGCGgcAGCGCGuuccaCCGCGCGCcgGGUCg -3'
miRNA:   3'- -UGC--UCGUGCuugugGGCGUGCG--CCAG- -5'
23261 3' -58.1 NC_005259.1 + 60173 0.67 0.576627
Target:  5'- cACGGGCgGCGAACGCCUGCuCGaccgacCGGg- -3'
miRNA:   3'- -UGCUCG-UGCUUGUGGGCGuGC------GCCag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.