miRNA display CGI


Results 1 - 20 of 144 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23302 3' -64 NC_005259.1 + 2742 0.66 0.401701
Target:  5'- aUGCCG-AgGUCGCCGUCGugCaguaCGAc -3'
miRNA:   3'- aGCGGCaUgCGGCGGCGGCugGg---GCU- -5'
23302 3' -64 NC_005259.1 + 13682 0.66 0.401701
Target:  5'- gUGCuCGUGgaccCGUgGCCgGUCGACCCCGc -3'
miRNA:   3'- aGCG-GCAU----GCGgCGG-CGGCUGGGGCu -5'
23302 3' -64 NC_005259.1 + 7421 0.66 0.401701
Target:  5'- gUCGCCGUcggcggugcccGCGCCGCaugGCa-GCgCCGAg -3'
miRNA:   3'- -AGCGGCA-----------UGCGGCGg--CGgcUGgGGCU- -5'
23302 3' -64 NC_005259.1 + 22699 0.66 0.401701
Target:  5'- -nGCCGU-CGCCGUCaCCGGCUcgaugagcuacgCCGAg -3'
miRNA:   3'- agCGGCAuGCGGCGGcGGCUGG------------GGCU- -5'
23302 3' -64 NC_005259.1 + 46771 0.66 0.401701
Target:  5'- gCGCCGacagccGCGcCCGCCggGCCGAacaCCGAg -3'
miRNA:   3'- aGCGGCa-----UGC-GGCGG--CGGCUgg-GGCU- -5'
23302 3' -64 NC_005259.1 + 60536 0.66 0.401701
Target:  5'- -gGCCGggacGCaGCCGCuCGUCGGCaugCCCGGu -3'
miRNA:   3'- agCGGCa---UG-CGGCG-GCGGCUG---GGGCU- -5'
23302 3' -64 NC_005259.1 + 20527 0.66 0.396654
Target:  5'- -aGCacggGUGCGCUGCCcgcaGCgugguggaucagcacCGACCCCGAg -3'
miRNA:   3'- agCGg---CAUGCGGCGG----CG---------------GCUGGGGCU- -5'
23302 3' -64 NC_005259.1 + 12328 0.66 0.393312
Target:  5'- cCGCCGccagcucACGCa-CCGCCG-CCUCGAa -3'
miRNA:   3'- aGCGGCa------UGCGgcGGCGGCuGGGGCU- -5'
23302 3' -64 NC_005259.1 + 30719 0.66 0.393312
Target:  5'- cCGCCGacGCGCCGCaCGagCGAUaCCUGAg -3'
miRNA:   3'- aGCGGCa-UGCGGCG-GCg-GCUG-GGGCU- -5'
23302 3' -64 NC_005259.1 + 42631 0.66 0.393312
Target:  5'- gUCGCgCGUAgGCa-CC-UCGGCCCCGAu -3'
miRNA:   3'- -AGCG-GCAUgCGgcGGcGGCUGGGGCU- -5'
23302 3' -64 NC_005259.1 + 35865 0.66 0.393312
Target:  5'- cCGCCGcguccaccGCaGCCGCCGCCGAggcagaCCaCGGc -3'
miRNA:   3'- aGCGGCa-------UG-CGGCGGCGGCUg-----GG-GCU- -5'
23302 3' -64 NC_005259.1 + 8343 0.66 0.393312
Target:  5'- -aGCCGgucACGCUGCUGCCGGuauCgCUCGGc -3'
miRNA:   3'- agCGGCa--UGCGGCGGCGGCU---G-GGGCU- -5'
23302 3' -64 NC_005259.1 + 15276 0.66 0.389988
Target:  5'- gUCGCCG-ACGagcaagcgaucuaCaCCGCCGACCUCGc -3'
miRNA:   3'- -AGCGGCaUGCg------------GcGGCGGCUGGGGCu -5'
23302 3' -64 NC_005259.1 + 35508 0.66 0.385036
Target:  5'- gCcCCGUugcCGCCGCCGCCgGGCacaCCGc -3'
miRNA:   3'- aGcGGCAu--GCGGCGGCGG-CUGg--GGCu -5'
23302 3' -64 NC_005259.1 + 24825 0.66 0.385036
Target:  5'- aCGCCGUGC-CCGCa-CCGACCaaGc -3'
miRNA:   3'- aGCGGCAUGcGGCGgcGGCUGGggCu -5'
23302 3' -64 NC_005259.1 + 43950 0.66 0.385036
Target:  5'- gCGUCGgcgaugggcgGgGCCGCCGCCuGACCgagggcggugCCGAu -3'
miRNA:   3'- aGCGGCa---------UgCGGCGGCGG-CUGG----------GGCU- -5'
23302 3' -64 NC_005259.1 + 26087 0.66 0.385036
Target:  5'- ------nAgGCCGCCGCCGAgaagacCCCCGAg -3'
miRNA:   3'- agcggcaUgCGGCGGCGGCU------GGGGCU- -5'
23302 3' -64 NC_005259.1 + 48131 0.66 0.385036
Target:  5'- cCGCCu--CGaCCaCCGCCG-CCCCGGc -3'
miRNA:   3'- aGCGGcauGC-GGcGGCGGCuGGGGCU- -5'
23302 3' -64 NC_005259.1 + 64685 0.66 0.385036
Target:  5'- cCGCC--GCGCCGCCGagCGAUaCCCa- -3'
miRNA:   3'- aGCGGcaUGCGGCGGCg-GCUG-GGGcu -5'
23302 3' -64 NC_005259.1 + 61966 0.66 0.376877
Target:  5'- -aGCCucacGCGCCGCUGCCucGACCuuGc -3'
miRNA:   3'- agCGGca--UGCGGCGGCGG--CUGGggCu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.