miRNA display CGI


Results 41 - 60 of 223 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23325 5' -63.2 NC_005259.1 + 47942 0.69 0.268315
Target:  5'- aAGCCGAUgacggcggUGCCgaUGGCCGCCgcGCCGCCc -3'
miRNA:   3'- cUCGGCUG--------GCGG--GCUGGUGG--CGGUGG- -5'
23325 5' -63.2 NC_005259.1 + 47809 0.68 0.28125
Target:  5'- uGAGUCgcgaGACCuCgCgGGCCACCGCUGCCg -3'
miRNA:   3'- -CUCGG----CUGGcG-GgCUGGUGGCGGUGG- -5'
23325 5' -63.2 NC_005259.1 + 47276 0.66 0.411041
Target:  5'- cAGCgcACCGagcaGACCGCCGUCGCCg -3'
miRNA:   3'- cUCGgcUGGCggg-CUGGUGGCGGUGG- -5'
23325 5' -63.2 NC_005259.1 + 47016 0.68 0.2879
Target:  5'- aAGCCGACCa--CGACCGCCuCCAgCa -3'
miRNA:   3'- cUCGGCUGGcggGCUGGUGGcGGUgG- -5'
23325 5' -63.2 NC_005259.1 + 46951 0.74 0.117493
Target:  5'- -cGCCGACCGCguugagcuugUUGGCCA-CGCCGCCg -3'
miRNA:   3'- cuCGGCUGGCG----------GGCUGGUgGCGGUGG- -5'
23325 5' -63.2 NC_005259.1 + 46886 0.69 0.270863
Target:  5'- -cGCCG-CCGCCCGcgaugagcgcCCGCCgagcaguccgcgugcGCCGCCg -3'
miRNA:   3'- cuCGGCuGGCGGGCu---------GGUGG---------------CGGUGG- -5'
23325 5' -63.2 NC_005259.1 + 46791 0.72 0.163736
Target:  5'- cGGGCCGAacaccgaGCCUGcgagcgcACCACCGgCCACCu -3'
miRNA:   3'- -CUCGGCUgg-----CGGGC-------UGGUGGC-GGUGG- -5'
23325 5' -63.2 NC_005259.1 + 46679 0.71 0.181568
Target:  5'- cGAGCU--CgGCCUGAgCCGCCGCCGCg -3'
miRNA:   3'- -CUCGGcuGgCGGGCU-GGUGGCGGUGg -5'
23325 5' -63.2 NC_005259.1 + 46556 0.74 0.12506
Target:  5'- -cGCCGACCGCgCCuauggucgcggcgucGACCG-CGCCGCCc -3'
miRNA:   3'- cuCGGCUGGCG-GG---------------CUGGUgGCGGUGG- -5'
23325 5' -63.2 NC_005259.1 + 46360 0.72 0.159632
Target:  5'- uGGGCCGcgauggcACCGCCCGGCC-CCaucucacgcaGCCGCg -3'
miRNA:   3'- -CUCGGC-------UGGCGGGCUGGuGG----------CGGUGg -5'
23325 5' -63.2 NC_005259.1 + 45821 0.71 0.205624
Target:  5'- uAGCCGgggaugaccauGCCGUCCGcACCACCGggGCCg -3'
miRNA:   3'- cUCGGC-----------UGGCGGGC-UGGUGGCggUGG- -5'
23325 5' -63.2 NC_005259.1 + 45709 0.67 0.345556
Target:  5'- cGAGuuGAUCGCguaGAUCGCCuGCgCACCa -3'
miRNA:   3'- -CUCggCUGGCGgg-CUGGUGG-CG-GUGG- -5'
23325 5' -63.2 NC_005259.1 + 45645 0.71 0.177066
Target:  5'- -cGCCGguGCCGCCgUGAaCACCGCCGuCCg -3'
miRNA:   3'- cuCGGC--UGGCGG-GCUgGUGGCGGU-GG- -5'
23325 5' -63.2 NC_005259.1 + 45513 0.68 0.315736
Target:  5'- uGGCC-ACCGCgCCGguguugGCCGCCGUgGCUg -3'
miRNA:   3'- cUCGGcUGGCG-GGC------UGGUGGCGgUGG- -5'
23325 5' -63.2 NC_005259.1 + 45405 0.8 0.043764
Target:  5'- -cGCCGAgCGCgCUGAUgGCCGCCGCCg -3'
miRNA:   3'- cuCGGCUgGCG-GGCUGgUGGCGGUGG- -5'
23325 5' -63.2 NC_005259.1 + 45327 0.78 0.058924
Target:  5'- -cGCCGaACUGCgUGGCCugCGCCGCCu -3'
miRNA:   3'- cuCGGC-UGGCGgGCUGGugGCGGUGG- -5'
23325 5' -63.2 NC_005259.1 + 45149 0.67 0.35332
Target:  5'- -uGCUGAUCGCUCaGGCCGCCcuuggccuuguuGCgCGCCg -3'
miRNA:   3'- cuCGGCUGGCGGG-CUGGUGG------------CG-GUGG- -5'
23325 5' -63.2 NC_005259.1 + 45006 0.79 0.054346
Target:  5'- -cGCCGACCGCCgGgGCCG-CGCCGCCc -3'
miRNA:   3'- cuCGGCUGGCGGgC-UGGUgGCGGUGG- -5'
23325 5' -63.2 NC_005259.1 + 44650 0.75 0.103082
Target:  5'- -uGCCG-CCGCCCGACUcgaaCGCCACa -3'
miRNA:   3'- cuCGGCuGGCGGGCUGGug--GCGGUGg -5'
23325 5' -63.2 NC_005259.1 + 44485 0.71 0.181114
Target:  5'- cGGGCCaguuggugacguaGACCGgggugcCCUGGCCACCcacGCCGCCg -3'
miRNA:   3'- -CUCGG-------------CUGGC------GGGCUGGUGG---CGGUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.