miRNA display CGI


Results 1 - 20 of 275 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23558 3' -57.9 NC_005261.1 + 50837 0.66 0.793091
Target:  5'- gCGCcGCGAGCugGcGCCUGUGgCUcGCc -3'
miRNA:   3'- -GUGaUGCUCGugU-CGGACGCgGA-CGu -5'
23558 3' -57.9 NC_005261.1 + 73122 0.66 0.793091
Target:  5'- aGCUACuGGCGCAacucGCgCUGCGCC-GCc -3'
miRNA:   3'- gUGAUGcUCGUGU----CG-GACGCGGaCGu -5'
23558 3' -57.9 NC_005261.1 + 37128 0.66 0.793091
Target:  5'- gCGCcaagGCGcGCGCGGCC-GCG-CUGCAg -3'
miRNA:   3'- -GUGa---UGCuCGUGUCGGaCGCgGACGU- -5'
23558 3' -57.9 NC_005261.1 + 93352 0.66 0.793091
Target:  5'- gCGC-GCGcAGCGCGcGCCagUGCGCCgGCGu -3'
miRNA:   3'- -GUGaUGC-UCGUGU-CGG--ACGCGGaCGU- -5'
23558 3' -57.9 NC_005261.1 + 88039 0.66 0.793091
Target:  5'- -cCUGgGGGCGgucCAGUCacGCGCCUGCGc -3'
miRNA:   3'- guGAUgCUCGU---GUCGGa-CGCGGACGU- -5'
23558 3' -57.9 NC_005261.1 + 87575 0.66 0.793091
Target:  5'- gACUuggGCGAGCGCGuucGCCgGCGCCa--- -3'
miRNA:   3'- gUGA---UGCUCGUGU---CGGaCGCGGacgu -5'
23558 3' -57.9 NC_005261.1 + 108388 0.66 0.793091
Target:  5'- cCGCgcccGCGcGCuccaGCAGCCgcgccaccGCGCCUGCGu -3'
miRNA:   3'- -GUGa---UGCuCG----UGUCGGa-------CGCGGACGU- -5'
23558 3' -57.9 NC_005261.1 + 62355 0.66 0.793091
Target:  5'- cCACcACGcGCGCcaccAGCUcgcGCGCCUGCGg -3'
miRNA:   3'- -GUGaUGCuCGUG----UCGGa--CGCGGACGU- -5'
23558 3' -57.9 NC_005261.1 + 4485 0.66 0.793091
Target:  5'- gCGCcGCG-GCGUAGCCUGCGCggGCc -3'
miRNA:   3'- -GUGaUGCuCGUGUCGGACGCGgaCGu -5'
23558 3' -57.9 NC_005261.1 + 88753 0.66 0.793091
Target:  5'- uGCUGCagcuuccGCGCGGCCUgcGCGCCcGCc -3'
miRNA:   3'- gUGAUGcu-----CGUGUCGGA--CGCGGaCGu -5'
23558 3' -57.9 NC_005261.1 + 19377 0.66 0.793091
Target:  5'- gGCcGCGGGCGCGccGCCcuccGCGCC-GCAg -3'
miRNA:   3'- gUGaUGCUCGUGU--CGGa---CGCGGaCGU- -5'
23558 3' -57.9 NC_005261.1 + 100630 0.66 0.793091
Target:  5'- cCGCUcgcACaGGcGCGCGGCCcGCGCC-GCAa -3'
miRNA:   3'- -GUGA---UG-CU-CGUGUCGGaCGCGGaCGU- -5'
23558 3' -57.9 NC_005261.1 + 109002 0.66 0.793091
Target:  5'- gCGCcGCG-GCGUAGCCUGCGCggGCc -3'
miRNA:   3'- -GUGaUGCuCGUGUCGGACGCGgaCGu -5'
23558 3' -57.9 NC_005261.1 + 41482 0.66 0.793091
Target:  5'- -uCUGCGAGUaguugguaauGCGGCCcgaguUG-GCCUGCAg -3'
miRNA:   3'- guGAUGCUCG----------UGUCGG-----ACgCGGACGU- -5'
23558 3' -57.9 NC_005261.1 + 131187 0.66 0.793091
Target:  5'- gGCUACGcccgcGGCGCGGUCgccgccggcGCGCCcGCGu -3'
miRNA:   3'- gUGAUGC-----UCGUGUCGGa--------CGCGGaCGU- -5'
23558 3' -57.9 NC_005261.1 + 29921 0.66 0.793091
Target:  5'- gGCUgcGCGAGCugGcggacgcuGCgCUGCGgCCUGCc -3'
miRNA:   3'- gUGA--UGCUCGugU--------CG-GACGC-GGACGu -5'
23558 3' -57.9 NC_005261.1 + 31482 0.66 0.783859
Target:  5'- aGCUcgugGCGGGCGCGGag-GCGCCgggGCu -3'
miRNA:   3'- gUGA----UGCUCGUGUCggaCGCGGa--CGu -5'
23558 3' -57.9 NC_005261.1 + 7588 0.66 0.783859
Target:  5'- gCGCgucgGCGAGCGCAcgcgcGCCccGCGCgCUGUu -3'
miRNA:   3'- -GUGa---UGCUCGUGU-----CGGa-CGCG-GACGu -5'
23558 3' -57.9 NC_005261.1 + 11710 0.66 0.783859
Target:  5'- gCGCgGCGGGCGCGGgCgcccagGCagaccGCCUGCGg -3'
miRNA:   3'- -GUGaUGCUCGUGUCgGa-----CG-----CGGACGU- -5'
23558 3' -57.9 NC_005261.1 + 126060 0.66 0.783859
Target:  5'- gGCgGCG-GCGCuGGCCUGUgcggggcuugggGCCUGCGc -3'
miRNA:   3'- gUGaUGCuCGUG-UCGGACG------------CGGACGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.