Results 1 - 20 of 275 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
23558 | 3' | -57.9 | NC_005261.1 | + | 50837 | 0.66 | 0.793091 |
Target: 5'- gCGCcGCGAGCugGcGCCUGUGgCUcGCc -3' miRNA: 3'- -GUGaUGCUCGugU-CGGACGCgGA-CGu -5' |
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23558 | 3' | -57.9 | NC_005261.1 | + | 73122 | 0.66 | 0.793091 |
Target: 5'- aGCUACuGGCGCAacucGCgCUGCGCC-GCc -3' miRNA: 3'- gUGAUGcUCGUGU----CG-GACGCGGaCGu -5' |
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23558 | 3' | -57.9 | NC_005261.1 | + | 37128 | 0.66 | 0.793091 |
Target: 5'- gCGCcaagGCGcGCGCGGCC-GCG-CUGCAg -3' miRNA: 3'- -GUGa---UGCuCGUGUCGGaCGCgGACGU- -5' |
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23558 | 3' | -57.9 | NC_005261.1 | + | 93352 | 0.66 | 0.793091 |
Target: 5'- gCGC-GCGcAGCGCGcGCCagUGCGCCgGCGu -3' miRNA: 3'- -GUGaUGC-UCGUGU-CGG--ACGCGGaCGU- -5' |
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23558 | 3' | -57.9 | NC_005261.1 | + | 88039 | 0.66 | 0.793091 |
Target: 5'- -cCUGgGGGCGgucCAGUCacGCGCCUGCGc -3' miRNA: 3'- guGAUgCUCGU---GUCGGa-CGCGGACGU- -5' |
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23558 | 3' | -57.9 | NC_005261.1 | + | 87575 | 0.66 | 0.793091 |
Target: 5'- gACUuggGCGAGCGCGuucGCCgGCGCCa--- -3' miRNA: 3'- gUGA---UGCUCGUGU---CGGaCGCGGacgu -5' |
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23558 | 3' | -57.9 | NC_005261.1 | + | 108388 | 0.66 | 0.793091 |
Target: 5'- cCGCgcccGCGcGCuccaGCAGCCgcgccaccGCGCCUGCGu -3' miRNA: 3'- -GUGa---UGCuCG----UGUCGGa-------CGCGGACGU- -5' |
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23558 | 3' | -57.9 | NC_005261.1 | + | 62355 | 0.66 | 0.793091 |
Target: 5'- cCACcACGcGCGCcaccAGCUcgcGCGCCUGCGg -3' miRNA: 3'- -GUGaUGCuCGUG----UCGGa--CGCGGACGU- -5' |
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23558 | 3' | -57.9 | NC_005261.1 | + | 4485 | 0.66 | 0.793091 |
Target: 5'- gCGCcGCG-GCGUAGCCUGCGCggGCc -3' miRNA: 3'- -GUGaUGCuCGUGUCGGACGCGgaCGu -5' |
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23558 | 3' | -57.9 | NC_005261.1 | + | 88753 | 0.66 | 0.793091 |
Target: 5'- uGCUGCagcuuccGCGCGGCCUgcGCGCCcGCc -3' miRNA: 3'- gUGAUGcu-----CGUGUCGGA--CGCGGaCGu -5' |
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23558 | 3' | -57.9 | NC_005261.1 | + | 19377 | 0.66 | 0.793091 |
Target: 5'- gGCcGCGGGCGCGccGCCcuccGCGCC-GCAg -3' miRNA: 3'- gUGaUGCUCGUGU--CGGa---CGCGGaCGU- -5' |
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23558 | 3' | -57.9 | NC_005261.1 | + | 100630 | 0.66 | 0.793091 |
Target: 5'- cCGCUcgcACaGGcGCGCGGCCcGCGCC-GCAa -3' miRNA: 3'- -GUGA---UG-CU-CGUGUCGGaCGCGGaCGU- -5' |
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23558 | 3' | -57.9 | NC_005261.1 | + | 109002 | 0.66 | 0.793091 |
Target: 5'- gCGCcGCG-GCGUAGCCUGCGCggGCc -3' miRNA: 3'- -GUGaUGCuCGUGUCGGACGCGgaCGu -5' |
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23558 | 3' | -57.9 | NC_005261.1 | + | 41482 | 0.66 | 0.793091 |
Target: 5'- -uCUGCGAGUaguugguaauGCGGCCcgaguUG-GCCUGCAg -3' miRNA: 3'- guGAUGCUCG----------UGUCGG-----ACgCGGACGU- -5' |
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23558 | 3' | -57.9 | NC_005261.1 | + | 131187 | 0.66 | 0.793091 |
Target: 5'- gGCUACGcccgcGGCGCGGUCgccgccggcGCGCCcGCGu -3' miRNA: 3'- gUGAUGC-----UCGUGUCGGa--------CGCGGaCGU- -5' |
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23558 | 3' | -57.9 | NC_005261.1 | + | 29921 | 0.66 | 0.793091 |
Target: 5'- gGCUgcGCGAGCugGcggacgcuGCgCUGCGgCCUGCc -3' miRNA: 3'- gUGA--UGCUCGugU--------CG-GACGC-GGACGu -5' |
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23558 | 3' | -57.9 | NC_005261.1 | + | 31482 | 0.66 | 0.783859 |
Target: 5'- aGCUcgugGCGGGCGCGGag-GCGCCgggGCu -3' miRNA: 3'- gUGA----UGCUCGUGUCggaCGCGGa--CGu -5' |
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23558 | 3' | -57.9 | NC_005261.1 | + | 7588 | 0.66 | 0.783859 |
Target: 5'- gCGCgucgGCGAGCGCAcgcgcGCCccGCGCgCUGUu -3' miRNA: 3'- -GUGa---UGCUCGUGU-----CGGa-CGCG-GACGu -5' |
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23558 | 3' | -57.9 | NC_005261.1 | + | 11710 | 0.66 | 0.783859 |
Target: 5'- gCGCgGCGGGCGCGGgCgcccagGCagaccGCCUGCGg -3' miRNA: 3'- -GUGaUGCUCGUGUCgGa-----CG-----CGGACGU- -5' |
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23558 | 3' | -57.9 | NC_005261.1 | + | 126060 | 0.66 | 0.783859 |
Target: 5'- gGCgGCG-GCGCuGGCCUGUgcggggcuugggGCCUGCGc -3' miRNA: 3'- gUGaUGCuCGUG-UCGGACG------------CGGACGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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