miRNA display CGI


Results 1 - 20 of 791 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23561 3' -62.9 NC_005261.1 + 84243 0.65 0.587209
Target:  5'- cUCGUccAGGUCGGgGCGcuuggcccccggcaUGGCGCAGgUGc -3'
miRNA:   3'- -GGCG--UCCGGUCgCGC--------------ACCGCGUCgAC- -5'
23561 3' -62.9 NC_005261.1 + 2082 0.66 0.580335
Target:  5'- gCCGCggaAGGCCAGguccCGCGUcGCgaGCAGCa- -3'
miRNA:   3'- -GGCG---UCCGGUC----GCGCAcCG--CGUCGac -5'
23561 3' -62.9 NC_005261.1 + 11220 0.66 0.580335
Target:  5'- gCCGCGuGGCCcccCGCG-GGCGC-GCUu -3'
miRNA:   3'- -GGCGU-CCGGuc-GCGCaCCGCGuCGAc -5'
23561 3' -62.9 NC_005261.1 + 32188 0.66 0.580335
Target:  5'- gCGCuaGGGCCgggcAGCGCgGUGGCGUGccuccgguccucGCUGu -3'
miRNA:   3'- gGCG--UCCGG----UCGCG-CACCGCGU------------CGAC- -5'
23561 3' -62.9 NC_005261.1 + 9511 0.66 0.580335
Target:  5'- aCgGCGGGCgGGCGgGgcccgGGCGCgccucccgAGCUc -3'
miRNA:   3'- -GgCGUCCGgUCGCgCa----CCGCG--------UCGAc -5'
23561 3' -62.9 NC_005261.1 + 83707 0.66 0.580335
Target:  5'- gCCGCAG-CCAGCGCaccaUGaGCGCguuuAGCUu -3'
miRNA:   3'- -GGCGUCcGGUCGCGc---AC-CGCG----UCGAc -5'
23561 3' -62.9 NC_005261.1 + 115287 0.66 0.580335
Target:  5'- aCGCGGGCagCAGCcgcaacGCGUcGGCGCAcGuCUGc -3'
miRNA:   3'- gGCGUCCG--GUCG------CGCA-CCGCGU-C-GAC- -5'
23561 3' -62.9 NC_005261.1 + 106600 0.66 0.580335
Target:  5'- gCCGCggaAGGCCAGguccCGCGUcGCgaGCAGCa- -3'
miRNA:   3'- -GGCG---UCCGGUC----GCGCAcCG--CGUCGac -5'
23561 3' -62.9 NC_005261.1 + 31254 0.66 0.580335
Target:  5'- aCGCGGuGCgCGGCGCGcgcgccgaGGCGgAGCg- -3'
miRNA:   3'- gGCGUC-CG-GUCGCGCa-------CCGCgUCGac -5'
23561 3' -62.9 NC_005261.1 + 3728 0.66 0.580335
Target:  5'- gCGCAGGCUGuGCuCGUaGUGCAGCa- -3'
miRNA:   3'- gGCGUCCGGU-CGcGCAcCGCGUCGac -5'
23561 3' -62.9 NC_005261.1 + 72482 0.66 0.580335
Target:  5'- nCGC-GGCCAGCGCcagGaGCGCcGCg- -3'
miRNA:   3'- gGCGuCCGGUCGCGca-C-CGCGuCGac -5'
23561 3' -62.9 NC_005261.1 + 18438 0.66 0.580335
Target:  5'- cUCGCcGGgCAGCGCGUuccccGUGCAGUUa -3'
miRNA:   3'- -GGCGuCCgGUCGCGCAc----CGCGUCGAc -5'
23561 3' -62.9 NC_005261.1 + 15156 0.66 0.580335
Target:  5'- uCCGC-GGUgGGgGUG-GGCGUAGCg- -3'
miRNA:   3'- -GGCGuCCGgUCgCGCaCCGCGUCGac -5'
23561 3' -62.9 NC_005261.1 + 16262 0.66 0.580335
Target:  5'- -gGCGGcGCUggAGCGCGgcacGGCG-AGCUGg -3'
miRNA:   3'- ggCGUC-CGG--UCGCGCa---CCGCgUCGAC- -5'
23561 3' -62.9 NC_005261.1 + 59344 0.66 0.580335
Target:  5'- -gGCGGGCCGcUGC-UGGCGaacCGGCUGa -3'
miRNA:   3'- ggCGUCCGGUcGCGcACCGC---GUCGAC- -5'
23561 3' -62.9 NC_005261.1 + 57963 0.66 0.580335
Target:  5'- gCGCAcGCCGGCGaCGcaGGCGCGcGCg- -3'
miRNA:   3'- gGCGUcCGGUCGC-GCa-CCGCGU-CGac -5'
23561 3' -62.9 NC_005261.1 + 115738 0.66 0.580335
Target:  5'- gCCGCGuGGCCcccCGCG-GGCGC-GCUu -3'
miRNA:   3'- -GGCGU-CCGGuc-GCGCaCCGCGuCGAc -5'
23561 3' -62.9 NC_005261.1 + 68865 0.66 0.580335
Target:  5'- cUCG-AGGuCCAGCGCGc-GCGCGGCc- -3'
miRNA:   3'- -GGCgUCC-GGUCGCGCacCGCGUCGac -5'
23561 3' -62.9 NC_005261.1 + 48119 0.66 0.580335
Target:  5'- gCCGCGGGCC-GCGUc-GGCcCAGCc- -3'
miRNA:   3'- -GGCGUCCGGuCGCGcaCCGcGUCGac -5'
23561 3' -62.9 NC_005261.1 + 67678 0.66 0.579355
Target:  5'- uUCGCGGcGCCcugcggcggguggGGCGCG-GGCGCcGCc- -3'
miRNA:   3'- -GGCGUC-CGG-------------UCGCGCaCCGCGuCGac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.