Results 1 - 20 of 791 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
23561 | 3' | -62.9 | NC_005261.1 | + | 84243 | 0.65 | 0.587209 |
Target: 5'- cUCGUccAGGUCGGgGCGcuuggcccccggcaUGGCGCAGgUGc -3' miRNA: 3'- -GGCG--UCCGGUCgCGC--------------ACCGCGUCgAC- -5' |
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23561 | 3' | -62.9 | NC_005261.1 | + | 2082 | 0.66 | 0.580335 |
Target: 5'- gCCGCggaAGGCCAGguccCGCGUcGCgaGCAGCa- -3' miRNA: 3'- -GGCG---UCCGGUC----GCGCAcCG--CGUCGac -5' |
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23561 | 3' | -62.9 | NC_005261.1 | + | 11220 | 0.66 | 0.580335 |
Target: 5'- gCCGCGuGGCCcccCGCG-GGCGC-GCUu -3' miRNA: 3'- -GGCGU-CCGGuc-GCGCaCCGCGuCGAc -5' |
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23561 | 3' | -62.9 | NC_005261.1 | + | 32188 | 0.66 | 0.580335 |
Target: 5'- gCGCuaGGGCCgggcAGCGCgGUGGCGUGccuccgguccucGCUGu -3' miRNA: 3'- gGCG--UCCGG----UCGCG-CACCGCGU------------CGAC- -5' |
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23561 | 3' | -62.9 | NC_005261.1 | + | 9511 | 0.66 | 0.580335 |
Target: 5'- aCgGCGGGCgGGCGgGgcccgGGCGCgccucccgAGCUc -3' miRNA: 3'- -GgCGUCCGgUCGCgCa----CCGCG--------UCGAc -5' |
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23561 | 3' | -62.9 | NC_005261.1 | + | 83707 | 0.66 | 0.580335 |
Target: 5'- gCCGCAG-CCAGCGCaccaUGaGCGCguuuAGCUu -3' miRNA: 3'- -GGCGUCcGGUCGCGc---AC-CGCG----UCGAc -5' |
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23561 | 3' | -62.9 | NC_005261.1 | + | 115287 | 0.66 | 0.580335 |
Target: 5'- aCGCGGGCagCAGCcgcaacGCGUcGGCGCAcGuCUGc -3' miRNA: 3'- gGCGUCCG--GUCG------CGCA-CCGCGU-C-GAC- -5' |
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23561 | 3' | -62.9 | NC_005261.1 | + | 106600 | 0.66 | 0.580335 |
Target: 5'- gCCGCggaAGGCCAGguccCGCGUcGCgaGCAGCa- -3' miRNA: 3'- -GGCG---UCCGGUC----GCGCAcCG--CGUCGac -5' |
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23561 | 3' | -62.9 | NC_005261.1 | + | 31254 | 0.66 | 0.580335 |
Target: 5'- aCGCGGuGCgCGGCGCGcgcgccgaGGCGgAGCg- -3' miRNA: 3'- gGCGUC-CG-GUCGCGCa-------CCGCgUCGac -5' |
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23561 | 3' | -62.9 | NC_005261.1 | + | 3728 | 0.66 | 0.580335 |
Target: 5'- gCGCAGGCUGuGCuCGUaGUGCAGCa- -3' miRNA: 3'- gGCGUCCGGU-CGcGCAcCGCGUCGac -5' |
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23561 | 3' | -62.9 | NC_005261.1 | + | 72482 | 0.66 | 0.580335 |
Target: 5'- nCGC-GGCCAGCGCcagGaGCGCcGCg- -3' miRNA: 3'- gGCGuCCGGUCGCGca-C-CGCGuCGac -5' |
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23561 | 3' | -62.9 | NC_005261.1 | + | 18438 | 0.66 | 0.580335 |
Target: 5'- cUCGCcGGgCAGCGCGUuccccGUGCAGUUa -3' miRNA: 3'- -GGCGuCCgGUCGCGCAc----CGCGUCGAc -5' |
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23561 | 3' | -62.9 | NC_005261.1 | + | 15156 | 0.66 | 0.580335 |
Target: 5'- uCCGC-GGUgGGgGUG-GGCGUAGCg- -3' miRNA: 3'- -GGCGuCCGgUCgCGCaCCGCGUCGac -5' |
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23561 | 3' | -62.9 | NC_005261.1 | + | 16262 | 0.66 | 0.580335 |
Target: 5'- -gGCGGcGCUggAGCGCGgcacGGCG-AGCUGg -3' miRNA: 3'- ggCGUC-CGG--UCGCGCa---CCGCgUCGAC- -5' |
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23561 | 3' | -62.9 | NC_005261.1 | + | 59344 | 0.66 | 0.580335 |
Target: 5'- -gGCGGGCCGcUGC-UGGCGaacCGGCUGa -3' miRNA: 3'- ggCGUCCGGUcGCGcACCGC---GUCGAC- -5' |
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23561 | 3' | -62.9 | NC_005261.1 | + | 57963 | 0.66 | 0.580335 |
Target: 5'- gCGCAcGCCGGCGaCGcaGGCGCGcGCg- -3' miRNA: 3'- gGCGUcCGGUCGC-GCa-CCGCGU-CGac -5' |
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23561 | 3' | -62.9 | NC_005261.1 | + | 115738 | 0.66 | 0.580335 |
Target: 5'- gCCGCGuGGCCcccCGCG-GGCGC-GCUu -3' miRNA: 3'- -GGCGU-CCGGuc-GCGCaCCGCGuCGAc -5' |
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23561 | 3' | -62.9 | NC_005261.1 | + | 68865 | 0.66 | 0.580335 |
Target: 5'- cUCG-AGGuCCAGCGCGc-GCGCGGCc- -3' miRNA: 3'- -GGCgUCC-GGUCGCGCacCGCGUCGac -5' |
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23561 | 3' | -62.9 | NC_005261.1 | + | 48119 | 0.66 | 0.580335 |
Target: 5'- gCCGCGGGCC-GCGUc-GGCcCAGCc- -3' miRNA: 3'- -GGCGUCCGGuCGCGcaCCGcGUCGac -5' |
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23561 | 3' | -62.9 | NC_005261.1 | + | 67678 | 0.66 | 0.579355 |
Target: 5'- uUCGCGGcGCCcugcggcggguggGGCGCG-GGCGCcGCc- -3' miRNA: 3'- -GGCGUC-CGG-------------UCGCGCaCCGCGuCGac -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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