Results 1 - 20 of 137 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
23563 | 5' | -57.1 | NC_005261.1 | + | 85388 | 0.66 | 0.854601 |
Target: 5'- cUCGGGcuUCUgguAGGCGC-CCGCGagCCCg -3' miRNA: 3'- aAGUUC--AGG---UUCGCGaGGCGCagGGG- -5' |
|||||||
23563 | 5' | -57.1 | NC_005261.1 | + | 37767 | 0.66 | 0.854601 |
Target: 5'- ----cGcCCAAGCGC-CgGCG-CCCCa -3' miRNA: 3'- aaguuCaGGUUCGCGaGgCGCaGGGG- -5' |
|||||||
23563 | 5' | -57.1 | NC_005261.1 | + | 123287 | 0.66 | 0.854601 |
Target: 5'- ---uGGUCCGccAGCGcCUCCGCGaUgUCCa -3' miRNA: 3'- aaguUCAGGU--UCGC-GAGGCGC-AgGGG- -5' |
|||||||
23563 | 5' | -57.1 | NC_005261.1 | + | 107640 | 0.66 | 0.853816 |
Target: 5'- cUCGAGcgCCc-GCGCugcgcgcgcaaacUCCGCGgCCCCg -3' miRNA: 3'- aAGUUCa-GGuuCGCG-------------AGGCGCaGGGG- -5' |
|||||||
23563 | 5' | -57.1 | NC_005261.1 | + | 124910 | 0.66 | 0.853816 |
Target: 5'- -gCGAGUgCGAGgGCgCUGCGUacgaggcCCCCg -3' miRNA: 3'- aaGUUCAgGUUCgCGaGGCGCA-------GGGG- -5' |
|||||||
23563 | 5' | -57.1 | NC_005261.1 | + | 102575 | 0.66 | 0.85224 |
Target: 5'- cUCGccGUCCGcgucGGCGgccucgcccgcgccUUCCGCGUCCUCg -3' miRNA: 3'- aAGUu-CAGGU----UCGC--------------GAGGCGCAGGGG- -5' |
|||||||
23563 | 5' | -57.1 | NC_005261.1 | + | 108166 | 0.66 | 0.84666 |
Target: 5'- -gCGcGUCCGccagGGCGCgcggCCGCGgCUCCg -3' miRNA: 3'- aaGUuCAGGU----UCGCGa---GGCGCaGGGG- -5' |
|||||||
23563 | 5' | -57.1 | NC_005261.1 | + | 124554 | 0.66 | 0.84666 |
Target: 5'- -cCAcGcCCGcGCGCcCCGCGcCCCCc -3' miRNA: 3'- aaGUuCaGGUuCGCGaGGCGCaGGGG- -5' |
|||||||
23563 | 5' | -57.1 | NC_005261.1 | + | 103809 | 0.66 | 0.84666 |
Target: 5'- -gCAGGggCAGGCGCgggCCGCGcgccaCCCg -3' miRNA: 3'- aaGUUCagGUUCGCGa--GGCGCag---GGG- -5' |
|||||||
23563 | 5' | -57.1 | NC_005261.1 | + | 7641 | 0.66 | 0.838524 |
Target: 5'- -aCGGG-CCAGGCGCggggCCGCGcggcggcgcuUCCgCCc -3' miRNA: 3'- aaGUUCaGGUUCGCGa---GGCGC----------AGG-GG- -5' |
|||||||
23563 | 5' | -57.1 | NC_005261.1 | + | 84754 | 0.66 | 0.838524 |
Target: 5'- -gCGAGcgCUAGuGCGCgccugCUGCGUCCCg -3' miRNA: 3'- aaGUUCa-GGUU-CGCGa----GGCGCAGGGg -5' |
|||||||
23563 | 5' | -57.1 | NC_005261.1 | + | 2779 | 0.66 | 0.838524 |
Target: 5'- --gAGGUCCcgcAGCGC-CCGCG-CCgCCu -3' miRNA: 3'- aagUUCAGGu--UCGCGaGGCGCaGG-GG- -5' |
|||||||
23563 | 5' | -57.1 | NC_005261.1 | + | 42853 | 0.66 | 0.838524 |
Target: 5'- --aGAGUgCGAGCGCgUCGUGUCCg- -3' miRNA: 3'- aagUUCAgGUUCGCGaGGCGCAGGgg -5' |
|||||||
23563 | 5' | -57.1 | NC_005261.1 | + | 106735 | 0.66 | 0.838524 |
Target: 5'- cUCGugcAGcCCcGGCGcCUCCGCGcCCgCCa -3' miRNA: 3'- aAGU---UCaGGuUCGC-GAGGCGCaGG-GG- -5' |
|||||||
23563 | 5' | -57.1 | NC_005261.1 | + | 103680 | 0.66 | 0.837699 |
Target: 5'- -gCGAGgCCGAGCGC-CCGUuuauagcggccacGUCaCCCa -3' miRNA: 3'- aaGUUCaGGUUCGCGaGGCG-------------CAG-GGG- -5' |
|||||||
23563 | 5' | -57.1 | NC_005261.1 | + | 66438 | 0.66 | 0.830197 |
Target: 5'- -cCGAGaCCAgcgcGGCGCgcgCCGCcgGUCCCg -3' miRNA: 3'- aaGUUCaGGU----UCGCGa--GGCG--CAGGGg -5' |
|||||||
23563 | 5' | -57.1 | NC_005261.1 | + | 102520 | 0.66 | 0.830197 |
Target: 5'- -gCAGGUCCGcgugcagcuuGGcCGC-CUGCGgCCCCa -3' miRNA: 3'- aaGUUCAGGU----------UC-GCGaGGCGCaGGGG- -5' |
|||||||
23563 | 5' | -57.1 | NC_005261.1 | + | 59668 | 0.66 | 0.830197 |
Target: 5'- cUCGgcGGUCCcGGCGCgcgagcggaUCGCGgcUCCCCu -3' miRNA: 3'- aAGU--UCAGGuUCGCGa--------GGCGC--AGGGG- -5' |
|||||||
23563 | 5' | -57.1 | NC_005261.1 | + | 48023 | 0.66 | 0.830197 |
Target: 5'- -gCGAG----GGCGCUCCGCcGcCCCCg -3' miRNA: 3'- aaGUUCagguUCGCGAGGCG-CaGGGG- -5' |
|||||||
23563 | 5' | -57.1 | NC_005261.1 | + | 16645 | 0.66 | 0.830197 |
Target: 5'- -aCGAGgCCGAGgGCgagagcgaggCCuCGUCCCCg -3' miRNA: 3'- aaGUUCaGGUUCgCGa---------GGcGCAGGGG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home