Results 1 - 20 of 684 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
23564 | 3' | -61.4 | NC_005261.1 | + | 75619 | 0.66 | 0.684763 |
Target: 5'- cGGCgUCGCGUacguggacgacguccACCGCgCggCCgGCGCg -3' miRNA: 3'- uCCG-GGCGCA---------------UGGCGaGaaGGgCGCG- -5' |
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23564 | 3' | -61.4 | NC_005261.1 | + | 105585 | 0.66 | 0.684763 |
Target: 5'- aGGGCCucggggCGCGUGCgCGCgacgaacgcCUgcggcacguccccgcUCCCGUGCg -3' miRNA: 3'- -UCCGG------GCGCAUG-GCGa--------GA---------------AGGGCGCG- -5' |
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23564 | 3' | -61.4 | NC_005261.1 | + | 99582 | 0.66 | 0.684763 |
Target: 5'- uGGGCCUGCGcgcccagcgaguccACCGCgagCgucgUCCacaGCGCc -3' miRNA: 3'- -UCCGGGCGCa-------------UGGCGa--Ga---AGGg--CGCG- -5' |
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23564 | 3' | -61.4 | NC_005261.1 | + | 74112 | 0.66 | 0.680845 |
Target: 5'- cGGCCgCGCGgcaCGUgccgCCCGUGCc -3' miRNA: 3'- uCCGG-GCGCaugGCGagaaGGGCGCG- -5' |
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23564 | 3' | -61.4 | NC_005261.1 | + | 73005 | 0.66 | 0.680845 |
Target: 5'- -cGUCCGCGU-CCGCcCacCCCaGCGCg -3' miRNA: 3'- ucCGGGCGCAuGGCGaGaaGGG-CGCG- -5' |
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23564 | 3' | -61.4 | NC_005261.1 | + | 17825 | 0.66 | 0.680845 |
Target: 5'- cAGGCCgcucaGCGcagacGCCGCUCUgCUCgguGCGCg -3' miRNA: 3'- -UCCGGg----CGCa----UGGCGAGAaGGG---CGCG- -5' |
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23564 | 3' | -61.4 | NC_005261.1 | + | 64166 | 0.66 | 0.680845 |
Target: 5'- cGGgCCGCGUcgcgcagcuGCCGCagCccCCCgGCGCg -3' miRNA: 3'- uCCgGGCGCA---------UGGCGa-GaaGGG-CGCG- -5' |
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23564 | 3' | -61.4 | NC_005261.1 | + | 65839 | 0.66 | 0.680845 |
Target: 5'- -uGCCCGaGUGCCGCgaguagCggUCCGCGg -3' miRNA: 3'- ucCGGGCgCAUGGCGa-----GaaGGGCGCg -5' |
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23564 | 3' | -61.4 | NC_005261.1 | + | 122197 | 0.66 | 0.680845 |
Target: 5'- -cGCCCuGCGUGuuGCUCUUCCaagaCGa -3' miRNA: 3'- ucCGGG-CGCAUggCGAGAAGGgc--GCg -5' |
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23564 | 3' | -61.4 | NC_005261.1 | + | 95631 | 0.66 | 0.680845 |
Target: 5'- -cGCCgCGCGaGCUGcCUUUUgCCGCGUa -3' miRNA: 3'- ucCGG-GCGCaUGGC-GAGAAgGGCGCG- -5' |
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23564 | 3' | -61.4 | NC_005261.1 | + | 106916 | 0.66 | 0.680845 |
Target: 5'- cGGCgaGCGcgcCCGCgggcCCCGCGCg -3' miRNA: 3'- uCCGggCGCau-GGCGagaaGGGCGCG- -5' |
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23564 | 3' | -61.4 | NC_005261.1 | + | 132721 | 0.66 | 0.680845 |
Target: 5'- cGGCCuCGCcgccGUGCCGCggccccagCUaCCCcccgGCGCg -3' miRNA: 3'- uCCGG-GCG----CAUGGCGa-------GAaGGG----CGCG- -5' |
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23564 | 3' | -61.4 | NC_005261.1 | + | 31298 | 0.66 | 0.680845 |
Target: 5'- gAGGUgCGCGUGUCGCUggCggCCCugcaGCGCg -3' miRNA: 3'- -UCCGgGCGCAUGGCGA--GaaGGG----CGCG- -5' |
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23564 | 3' | -61.4 | NC_005261.1 | + | 62308 | 0.66 | 0.680845 |
Target: 5'- cGGGCgCGCGgcggccCCGCgg-UCCCccaGCGCc -3' miRNA: 3'- -UCCGgGCGCau----GGCGagaAGGG---CGCG- -5' |
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23564 | 3' | -61.4 | NC_005261.1 | + | 79554 | 0.66 | 0.680845 |
Target: 5'- cGGCCCGgGccuccUGCCGUaCca-CCGCGCc -3' miRNA: 3'- uCCGGGCgC-----AUGGCGaGaagGGCGCG- -5' |
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23564 | 3' | -61.4 | NC_005261.1 | + | 85139 | 0.66 | 0.680845 |
Target: 5'- cGGCgCUGCGUGCCuucCUgCggUCCGUGCg -3' miRNA: 3'- uCCG-GGCGCAUGGc--GA-GaaGGGCGCG- -5' |
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23564 | 3' | -61.4 | NC_005261.1 | + | 55555 | 0.66 | 0.680845 |
Target: 5'- uGGcGCCCGaCGaGCgGCUCgaggcgcucaUCCGCGCg -3' miRNA: 3'- -UC-CGGGC-GCaUGgCGAGaa--------GGGCGCG- -5' |
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23564 | 3' | -61.4 | NC_005261.1 | + | 107818 | 0.66 | 0.680845 |
Target: 5'- cGGCCCuaGCGgccgccGCCGcCUCUgCCCGguCGCc -3' miRNA: 3'- uCCGGG--CGCa-----UGGC-GAGAaGGGC--GCG- -5' |
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23564 | 3' | -61.4 | NC_005261.1 | + | 69221 | 0.66 | 0.680845 |
Target: 5'- cGGaCUCGCcaacgaaGCCGCggcgCCCGCGCg -3' miRNA: 3'- uCC-GGGCGca-----UGGCGagaaGGGCGCG- -5' |
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23564 | 3' | -61.4 | NC_005261.1 | + | 74748 | 0.66 | 0.680845 |
Target: 5'- cGGaCCuUGCGUAcuuCCGCUCg--CCGUGCa -3' miRNA: 3'- uCC-GG-GCGCAU---GGCGAGaagGGCGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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