miRNA display CGI


Results 1 - 20 of 684 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23564 3' -61.4 NC_005261.1 + 75619 0.66 0.684763
Target:  5'- cGGCgUCGCGUacguggacgacguccACCGCgCggCCgGCGCg -3'
miRNA:   3'- uCCG-GGCGCA---------------UGGCGaGaaGGgCGCG- -5'
23564 3' -61.4 NC_005261.1 + 105585 0.66 0.684763
Target:  5'- aGGGCCucggggCGCGUGCgCGCgacgaacgcCUgcggcacguccccgcUCCCGUGCg -3'
miRNA:   3'- -UCCGG------GCGCAUG-GCGa--------GA---------------AGGGCGCG- -5'
23564 3' -61.4 NC_005261.1 + 99582 0.66 0.684763
Target:  5'- uGGGCCUGCGcgcccagcgaguccACCGCgagCgucgUCCacaGCGCc -3'
miRNA:   3'- -UCCGGGCGCa-------------UGGCGa--Ga---AGGg--CGCG- -5'
23564 3' -61.4 NC_005261.1 + 74112 0.66 0.680845
Target:  5'- cGGCCgCGCGgcaCGUgccgCCCGUGCc -3'
miRNA:   3'- uCCGG-GCGCaugGCGagaaGGGCGCG- -5'
23564 3' -61.4 NC_005261.1 + 73005 0.66 0.680845
Target:  5'- -cGUCCGCGU-CCGCcCacCCCaGCGCg -3'
miRNA:   3'- ucCGGGCGCAuGGCGaGaaGGG-CGCG- -5'
23564 3' -61.4 NC_005261.1 + 17825 0.66 0.680845
Target:  5'- cAGGCCgcucaGCGcagacGCCGCUCUgCUCgguGCGCg -3'
miRNA:   3'- -UCCGGg----CGCa----UGGCGAGAaGGG---CGCG- -5'
23564 3' -61.4 NC_005261.1 + 64166 0.66 0.680845
Target:  5'- cGGgCCGCGUcgcgcagcuGCCGCagCccCCCgGCGCg -3'
miRNA:   3'- uCCgGGCGCA---------UGGCGa-GaaGGG-CGCG- -5'
23564 3' -61.4 NC_005261.1 + 65839 0.66 0.680845
Target:  5'- -uGCCCGaGUGCCGCgaguagCggUCCGCGg -3'
miRNA:   3'- ucCGGGCgCAUGGCGa-----GaaGGGCGCg -5'
23564 3' -61.4 NC_005261.1 + 122197 0.66 0.680845
Target:  5'- -cGCCCuGCGUGuuGCUCUUCCaagaCGa -3'
miRNA:   3'- ucCGGG-CGCAUggCGAGAAGGgc--GCg -5'
23564 3' -61.4 NC_005261.1 + 95631 0.66 0.680845
Target:  5'- -cGCCgCGCGaGCUGcCUUUUgCCGCGUa -3'
miRNA:   3'- ucCGG-GCGCaUGGC-GAGAAgGGCGCG- -5'
23564 3' -61.4 NC_005261.1 + 106916 0.66 0.680845
Target:  5'- cGGCgaGCGcgcCCGCgggcCCCGCGCg -3'
miRNA:   3'- uCCGggCGCau-GGCGagaaGGGCGCG- -5'
23564 3' -61.4 NC_005261.1 + 132721 0.66 0.680845
Target:  5'- cGGCCuCGCcgccGUGCCGCggccccagCUaCCCcccgGCGCg -3'
miRNA:   3'- uCCGG-GCG----CAUGGCGa-------GAaGGG----CGCG- -5'
23564 3' -61.4 NC_005261.1 + 31298 0.66 0.680845
Target:  5'- gAGGUgCGCGUGUCGCUggCggCCCugcaGCGCg -3'
miRNA:   3'- -UCCGgGCGCAUGGCGA--GaaGGG----CGCG- -5'
23564 3' -61.4 NC_005261.1 + 62308 0.66 0.680845
Target:  5'- cGGGCgCGCGgcggccCCGCgg-UCCCccaGCGCc -3'
miRNA:   3'- -UCCGgGCGCau----GGCGagaAGGG---CGCG- -5'
23564 3' -61.4 NC_005261.1 + 79554 0.66 0.680845
Target:  5'- cGGCCCGgGccuccUGCCGUaCca-CCGCGCc -3'
miRNA:   3'- uCCGGGCgC-----AUGGCGaGaagGGCGCG- -5'
23564 3' -61.4 NC_005261.1 + 85139 0.66 0.680845
Target:  5'- cGGCgCUGCGUGCCuucCUgCggUCCGUGCg -3'
miRNA:   3'- uCCG-GGCGCAUGGc--GA-GaaGGGCGCG- -5'
23564 3' -61.4 NC_005261.1 + 55555 0.66 0.680845
Target:  5'- uGGcGCCCGaCGaGCgGCUCgaggcgcucaUCCGCGCg -3'
miRNA:   3'- -UC-CGGGC-GCaUGgCGAGaa--------GGGCGCG- -5'
23564 3' -61.4 NC_005261.1 + 107818 0.66 0.680845
Target:  5'- cGGCCCuaGCGgccgccGCCGcCUCUgCCCGguCGCc -3'
miRNA:   3'- uCCGGG--CGCa-----UGGC-GAGAaGGGC--GCG- -5'
23564 3' -61.4 NC_005261.1 + 69221 0.66 0.680845
Target:  5'- cGGaCUCGCcaacgaaGCCGCggcgCCCGCGCg -3'
miRNA:   3'- uCC-GGGCGca-----UGGCGagaaGGGCGCG- -5'
23564 3' -61.4 NC_005261.1 + 74748 0.66 0.680845
Target:  5'- cGGaCCuUGCGUAcuuCCGCUCg--CCGUGCa -3'
miRNA:   3'- uCC-GG-GCGCAU---GGCGAGaagGGCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.