Results 1 - 20 of 528 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
23565 | 3' | -56.1 | NC_005261.1 | + | 19407 | 0.66 | 0.892714 |
Target: 5'- gAGCGGcagugccgcgcccagGGCGcAgACGCCCacgUGCGCCa- -3' miRNA: 3'- -UCGCU---------------UUGCuUgUGCGGG---ACGCGGac -5' |
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23565 | 3' | -56.1 | NC_005261.1 | + | 66240 | 0.66 | 0.892714 |
Target: 5'- aGGCcaGggGCGAcgcugcgcaccugccGCGCGCUCcGCGCCc- -3' miRNA: 3'- -UCG--CuuUGCU---------------UGUGCGGGaCGCGGac -5' |
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23565 | 3' | -56.1 | NC_005261.1 | + | 133658 | 0.66 | 0.890003 |
Target: 5'- gAGCGcuGCGuGCuCGCCUccgGCGCCa- -3' miRNA: 3'- -UCGCuuUGCuUGuGCGGGa--CGCGGac -5' |
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23565 | 3' | -56.1 | NC_005261.1 | + | 13048 | 0.66 | 0.890003 |
Target: 5'- cGCGggGcCGcGCGCGCCCcugccggGCGCg-- -3' miRNA: 3'- uCGCuuU-GCuUGUGCGGGa------CGCGgac -5' |
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23565 | 3' | -56.1 | NC_005261.1 | + | 100809 | 0.66 | 0.890003 |
Target: 5'- -cCGGAA-GGGCGCGUgcgCCUGCGCCg- -3' miRNA: 3'- ucGCUUUgCUUGUGCG---GGACGCGGac -5' |
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23565 | 3' | -56.1 | NC_005261.1 | + | 60347 | 0.66 | 0.890003 |
Target: 5'- cGGCGccGCGGccGCGCGCCaggcaGUGCUUGg -3' miRNA: 3'- -UCGCuuUGCU--UGUGCGGga---CGCGGAC- -5' |
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23565 | 3' | -56.1 | NC_005261.1 | + | 16376 | 0.66 | 0.890003 |
Target: 5'- cGGCGGGagccGCGGGCugcugGCGCCggUGCGCCg- -3' miRNA: 3'- -UCGCUU----UGCUUG-----UGCGGg-ACGCGGac -5' |
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23565 | 3' | -56.1 | NC_005261.1 | + | 133734 | 0.66 | 0.890003 |
Target: 5'- gGGCGgcGCGGACaACGCCacgcGCGCg-- -3' miRNA: 3'- -UCGCuuUGCUUG-UGCGGga--CGCGgac -5' |
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23565 | 3' | -56.1 | NC_005261.1 | + | 51371 | 0.66 | 0.890003 |
Target: 5'- cGCGGAguACGcGCAgGCCgUGCGCg-- -3' miRNA: 3'- uCGCUU--UGCuUGUgCGGgACGCGgac -5' |
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23565 | 3' | -56.1 | NC_005261.1 | + | 76992 | 0.66 | 0.890003 |
Target: 5'- cAGCGAGuCGAGCucgcgccgaACGCCgaGCGCg-- -3' miRNA: 3'- -UCGCUUuGCUUG---------UGCGGgaCGCGgac -5' |
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23565 | 3' | -56.1 | NC_005261.1 | + | 124917 | 0.66 | 0.890003 |
Target: 5'- cGCGGGaagccGCGGaggcuccgccGCGCGCgCUGUGCCg- -3' miRNA: 3'- uCGCUU-----UGCU----------UGUGCGgGACGCGGac -5' |
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23565 | 3' | -56.1 | NC_005261.1 | + | 18289 | 0.66 | 0.890003 |
Target: 5'- cGCGGuacgucguGACGGuCACGaCCUUGCGCUg- -3' miRNA: 3'- uCGCU--------UUGCUuGUGC-GGGACGCGGac -5' |
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23565 | 3' | -56.1 | NC_005261.1 | + | 65825 | 0.66 | 0.890003 |
Target: 5'- cGGCGgcGCGAAgcUGCCCgaGUGCCg- -3' miRNA: 3'- -UCGCuuUGCUUguGCGGGa-CGCGGac -5' |
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23565 | 3' | -56.1 | NC_005261.1 | + | 77144 | 0.66 | 0.890003 |
Target: 5'- cGGCGGc-CGAGC-UGCCCgugaGCGCCg- -3' miRNA: 3'- -UCGCUuuGCUUGuGCGGGa---CGCGGac -5' |
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23565 | 3' | -56.1 | NC_005261.1 | + | 117460 | 0.66 | 0.890003 |
Target: 5'- cGCGaAGACGGGCGCGUacaagUCggcgGCGCCa- -3' miRNA: 3'- uCGC-UUUGCUUGUGCG-----GGa---CGCGGac -5' |
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23565 | 3' | -56.1 | NC_005261.1 | + | 100021 | 0.66 | 0.890003 |
Target: 5'- gAGCGAggUGuugagcagcAGCACGCCgCggcGCGCCc- -3' miRNA: 3'- -UCGCUuuGC---------UUGUGCGG-Ga--CGCGGac -5' |
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23565 | 3' | -56.1 | NC_005261.1 | + | 64026 | 0.66 | 0.890003 |
Target: 5'- gAGCGuguucuCGucgGCGCgGCUCUGCGCCg- -3' miRNA: 3'- -UCGCuuu---GCu--UGUG-CGGGACGCGGac -5' |
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23565 | 3' | -56.1 | NC_005261.1 | + | 69340 | 0.66 | 0.88932 |
Target: 5'- cAGCGAcggagacGGCGAcgACGCGgCCgcgcGCGCgCUGg -3' miRNA: 3'- -UCGCU-------UUGCU--UGUGCgGGa---CGCG-GAC- -5' |
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23565 | 3' | -56.1 | NC_005261.1 | + | 120654 | 0.66 | 0.888634 |
Target: 5'- cGGCGcAAggcGCGGGCGCGCCUgugaucucgcgcGCGCCc- -3' miRNA: 3'- -UCGC-UU---UGCUUGUGCGGGa-----------CGCGGac -5' |
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23565 | 3' | -56.1 | NC_005261.1 | + | 70302 | 0.66 | 0.887255 |
Target: 5'- cGGCGggGgGGACAaugacgcaaaaggGCCCcggGCGCCg- -3' miRNA: 3'- -UCGCuuUgCUUGUg------------CGGGa--CGCGGac -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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