miRNA display CGI


Results 1 - 20 of 537 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23566 3' -63 NC_005261.1 + 107058 0.66 0.582201
Target:  5'- gGCCgCCa-GCGCCGCgGCGCUgGGCg- -3'
miRNA:   3'- -CGGgGGcaUGUGGCGaCGCGG-CCGau -5'
23566 3' -63 NC_005261.1 + 45284 0.66 0.582201
Target:  5'- aGCCUuuGUccgggACGCCgggcaGCUGCuccGCCGGCa- -3'
miRNA:   3'- -CGGGggCA-----UGUGG-----CGACG---CGGCCGau -5'
23566 3' -63 NC_005261.1 + 103373 0.66 0.582201
Target:  5'- aGCUCggCCGcGCGCCGCcGCGCCgcGGCc- -3'
miRNA:   3'- -CGGG--GGCaUGUGGCGaCGCGG--CCGau -5'
23566 3' -63 NC_005261.1 + 134307 0.66 0.582201
Target:  5'- gGCCuaCCCGgaggccgGCGCCgGCgGCGCgGGCg- -3'
miRNA:   3'- -CGG--GGGCa------UGUGG-CGaCGCGgCCGau -5'
23566 3' -63 NC_005261.1 + 60080 0.66 0.582201
Target:  5'- gGCCCgCCGgcaGCgGCggGCGCCGGg-- -3'
miRNA:   3'- -CGGG-GGCaugUGgCGa-CGCGGCCgau -5'
23566 3' -63 NC_005261.1 + 29790 0.66 0.582201
Target:  5'- gGCCuaCCCGgaggccgGCGCCgGCgGCGCgGGCg- -3'
miRNA:   3'- -CGG--GGGCa------UGUGG-CGaCGCGgCCGau -5'
23566 3' -63 NC_005261.1 + 95951 0.66 0.582201
Target:  5'- cGCCCgCCGggaucgACcCCaGC-GCGCCGGCc- -3'
miRNA:   3'- -CGGG-GGCa-----UGuGG-CGaCGCGGCCGau -5'
23566 3' -63 NC_005261.1 + 35662 0.66 0.582201
Target:  5'- cGCUCCCGcucccUGCcgGCCGCaccccCGCCGGCg- -3'
miRNA:   3'- -CGGGGGC-----AUG--UGGCGac---GCGGCCGau -5'
23566 3' -63 NC_005261.1 + 90561 0.66 0.582201
Target:  5'- ---gCCGUGCugCGCUcgGCGCugCGGCUGg -3'
miRNA:   3'- cgggGGCAUGugGCGA--CGCG--GCCGAU- -5'
23566 3' -63 NC_005261.1 + 64816 0.66 0.582201
Target:  5'- cGCgCgCGcGCGCCGC-GCGCCGGg-- -3'
miRNA:   3'- -CGgGgGCaUGUGGCGaCGCGGCCgau -5'
23566 3' -63 NC_005261.1 + 84084 0.66 0.582201
Target:  5'- -aCCCCGcGCACgGCcGCGUgCGGCg- -3'
miRNA:   3'- cgGGGGCaUGUGgCGaCGCG-GCCGau -5'
23566 3' -63 NC_005261.1 + 84665 0.66 0.582201
Target:  5'- cGCCgCCCGcGC-CCGCgGCcgcgcacacgaaGCCGGCg- -3'
miRNA:   3'- -CGG-GGGCaUGuGGCGaCG------------CGGCCGau -5'
23566 3' -63 NC_005261.1 + 67942 0.66 0.582201
Target:  5'- cCCCCCGccgGC-CCGCU-CGCgCGGCc- -3'
miRNA:   3'- cGGGGGCa--UGuGGCGAcGCG-GCCGau -5'
23566 3' -63 NC_005261.1 + 2541 0.66 0.582201
Target:  5'- gGCCgCCa-GCGCCGCgGCGCUgGGCg- -3'
miRNA:   3'- -CGGgGGcaUGUGGCGaCGCGG-CCGau -5'
23566 3' -63 NC_005261.1 + 85991 0.66 0.582201
Target:  5'- cGCCCucccacgaaaCCGUACcgGCCGCaGCGCCG-Cg- -3'
miRNA:   3'- -CGGG----------GGCAUG--UGGCGaCGCGGCcGau -5'
23566 3' -63 NC_005261.1 + 78020 0.66 0.582201
Target:  5'- cGCCgCagcaGUACGCCGCUccGCcccaGCCGGUg- -3'
miRNA:   3'- -CGGgGg---CAUGUGGCGA--CG----CGGCCGau -5'
23566 3' -63 NC_005261.1 + 104982 0.66 0.582201
Target:  5'- uCCCCCGccccgGCGCC-CaGCGCgGGCg- -3'
miRNA:   3'- cGGGGGCa----UGUGGcGaCGCGgCCGau -5'
23566 3' -63 NC_005261.1 + 75867 0.66 0.582201
Target:  5'- cGgCCCCGacgGCGCCGUggGCGCgcgcagCGGCg- -3'
miRNA:   3'- -CgGGGGCa--UGUGGCGa-CGCG------GCCGau -5'
23566 3' -63 NC_005261.1 + 15856 0.66 0.582201
Target:  5'- cGCCCCC--AgGCCGCggugGgGCCGcGCg- -3'
miRNA:   3'- -CGGGGGcaUgUGGCGa---CgCGGC-CGau -5'
23566 3' -63 NC_005261.1 + 76106 0.66 0.582201
Target:  5'- aGCUggagaaCCGc-CACCGCgccGCGCCGGCg- -3'
miRNA:   3'- -CGGg-----GGCauGUGGCGa--CGCGGCCGau -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.