miRNA display CGI


Results 1 - 20 of 104 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23566 5' -57.1 NC_005261.1 + 114141 0.66 0.827868
Target:  5'- gGGCAgGCGGGggUgggggcuggguGGGCgggGCCCAcUCGGg -3'
miRNA:   3'- -UCGU-CGUCCaaG-----------UCCGa--CGGGU-AGUC- -5'
23566 5' -57.1 NC_005261.1 + 37849 0.66 0.827868
Target:  5'- cGGCGGCGuGGUggAGGCgGCCUcgGUCGc -3'
miRNA:   3'- -UCGUCGU-CCAagUCCGaCGGG--UAGUc -5'
23566 5' -57.1 NC_005261.1 + 68789 0.66 0.827868
Target:  5'- cGCAGCucGUcCGcGCUGCCCGUCu- -3'
miRNA:   3'- uCGUCGucCAaGUcCGACGGGUAGuc -5'
23566 5' -57.1 NC_005261.1 + 112052 0.66 0.827868
Target:  5'- cGGgAGCcGGccUUCGGGCgUGCCCucGUCGGc -3'
miRNA:   3'- -UCgUCGuCC--AAGUCCG-ACGGG--UAGUC- -5'
23566 5' -57.1 NC_005261.1 + 60069 0.66 0.827868
Target:  5'- cGGCGGCcGGUccgCGGGCUGCgUGggCAGc -3'
miRNA:   3'- -UCGUCGuCCAa--GUCCGACGgGUa-GUC- -5'
23566 5' -57.1 NC_005261.1 + 82295 0.66 0.827868
Target:  5'- uGCAGCGcccg-AGGCUGUCCAUCGa -3'
miRNA:   3'- uCGUCGUccaagUCCGACGGGUAGUc -5'
23566 5' -57.1 NC_005261.1 + 9624 0.66 0.827868
Target:  5'- gGGCAgGCGGGggUgggggcuggguGGGCgggGCCCAcUCGGg -3'
miRNA:   3'- -UCGU-CGUCCaaG-----------UCCGa--CGGGU-AGUC- -5'
23566 5' -57.1 NC_005261.1 + 46060 0.66 0.827868
Target:  5'- gGGCAGCGGGaa-GGGCgccGCCUcgUGGc -3'
miRNA:   3'- -UCGUCGUCCaagUCCGa--CGGGuaGUC- -5'
23566 5' -57.1 NC_005261.1 + 28735 0.66 0.810341
Target:  5'- cGCGGCGGGcgCGGGCcccgGCCauuugcgcUCGGg -3'
miRNA:   3'- uCGUCGUCCaaGUCCGa---CGGgu------AGUC- -5'
23566 5' -57.1 NC_005261.1 + 128148 0.66 0.810341
Target:  5'- cGCGGCGGGggUCGGGCgGCUgGaaGGg -3'
miRNA:   3'- uCGUCGUCCa-AGUCCGaCGGgUagUC- -5'
23566 5' -57.1 NC_005261.1 + 50344 0.66 0.810341
Target:  5'- cAGCAGCcgccGGU--AGGCcgcGCCCGUCAu -3'
miRNA:   3'- -UCGUCGu---CCAagUCCGa--CGGGUAGUc -5'
23566 5' -57.1 NC_005261.1 + 23631 0.66 0.810341
Target:  5'- cGCGGCGGGggUCGGGCgGCUgGaaGGg -3'
miRNA:   3'- uCGUCGUCCa-AGUCCGaCGGgUagUC- -5'
23566 5' -57.1 NC_005261.1 + 128322 0.66 0.801322
Target:  5'- aGGcCGGCuGGggCGGGCUuGCCCcgggCGGg -3'
miRNA:   3'- -UC-GUCGuCCaaGUCCGA-CGGGua--GUC- -5'
23566 5' -57.1 NC_005261.1 + 128379 0.66 0.801322
Target:  5'- aGGcCGGCuGGggCGGGCUuGCCCcgggCGGg -3'
miRNA:   3'- -UC-GUCGuCCaaGUCCGA-CGGGua--GUC- -5'
23566 5' -57.1 NC_005261.1 + 23805 0.66 0.801322
Target:  5'- aGGcCGGCuGGggCGGGCUuGCCCcgggCGGg -3'
miRNA:   3'- -UC-GUCGuCCaaGUCCGA-CGGGua--GUC- -5'
23566 5' -57.1 NC_005261.1 + 23862 0.66 0.801322
Target:  5'- aGGcCGGCuGGggCGGGCUuGCCCcgggCGGg -3'
miRNA:   3'- -UC-GUCGuCCaaGUCCGA-CGGGua--GUC- -5'
23566 5' -57.1 NC_005261.1 + 136572 0.66 0.801322
Target:  5'- aGGC-GCGGGUgggCGGGCgcagagacGCCCGgcgCAGc -3'
miRNA:   3'- -UCGuCGUCCAa--GUCCGa-------CGGGUa--GUC- -5'
23566 5' -57.1 NC_005261.1 + 98199 0.66 0.801322
Target:  5'- cGCGGCGGGcagCGGGCgccGCCaCggCAGc -3'
miRNA:   3'- uCGUCGUCCaa-GUCCGa--CGG-GuaGUC- -5'
23566 5' -57.1 NC_005261.1 + 20039 0.66 0.801322
Target:  5'- cGCGGCAGGcgCGGG--GCCCG-CGGc -3'
miRNA:   3'- uCGUCGUCCaaGUCCgaCGGGUaGUC- -5'
23566 5' -57.1 NC_005261.1 + 6441 0.66 0.801322
Target:  5'- cGCGGCGGGcgC-GGCgucgggGCCCAgCGGc -3'
miRNA:   3'- uCGUCGUCCaaGuCCGa-----CGGGUaGUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.