Results 1 - 20 of 394 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
23567 | 3' | -57.7 | NC_005261.1 | + | 94735 | 0.66 | 0.8187 |
Target: 5'- cGCAGCg-CAgGAggUCCGCCGCgaagGCCu -3' miRNA: 3'- aUGUCGagGUaCU--GGGCGGCGaa--CGG- -5' |
|||||||
23567 | 3' | -57.7 | NC_005261.1 | + | 51920 | 0.66 | 0.8187 |
Target: 5'- cGCAGCggCCGcGGCCUGgucCCGCUcgucGCCg -3' miRNA: 3'- aUGUCGa-GGUaCUGGGC---GGCGAa---CGG- -5' |
|||||||
23567 | 3' | -57.7 | NC_005261.1 | + | 81418 | 0.66 | 0.8187 |
Target: 5'- cGCGGCaccaggaacaCCGUGGCCCGCUGCcggaaguggGCa -3' miRNA: 3'- aUGUCGa---------GGUACUGGGCGGCGaa-------CGg -5' |
|||||||
23567 | 3' | -57.7 | NC_005261.1 | + | 35930 | 0.66 | 0.8187 |
Target: 5'- cGCGGCgcgcggCUAcGACCCgcgGCCGCUggcgcggcagGCCg -3' miRNA: 3'- aUGUCGa-----GGUaCUGGG---CGGCGAa---------CGG- -5' |
|||||||
23567 | 3' | -57.7 | NC_005261.1 | + | 30317 | 0.66 | 0.8187 |
Target: 5'- cGCGGCacUCGUGGCCgagGCCGCg-GCCg -3' miRNA: 3'- aUGUCGa-GGUACUGGg--CGGCGaaCGG- -5' |
|||||||
23567 | 3' | -57.7 | NC_005261.1 | + | 11928 | 0.66 | 0.8187 |
Target: 5'- gGCGGCUgCGgcGGCCCgcGCCGCggcgGCUc -3' miRNA: 3'- aUGUCGAgGUa-CUGGG--CGGCGaa--CGG- -5' |
|||||||
23567 | 3' | -57.7 | NC_005261.1 | + | 137826 | 0.66 | 0.8187 |
Target: 5'- cGCGGgaCCAgGACCgcUGCCGCc-GCCg -3' miRNA: 3'- aUGUCgaGGUaCUGG--GCGGCGaaCGG- -5' |
|||||||
23567 | 3' | -57.7 | NC_005261.1 | + | 46068 | 0.66 | 0.8187 |
Target: 5'- gGCGGCUCCAccGagCGCgCGCUcGCCg -3' miRNA: 3'- aUGUCGAGGUacUggGCG-GCGAaCGG- -5' |
|||||||
23567 | 3' | -57.7 | NC_005261.1 | + | 63337 | 0.66 | 0.8187 |
Target: 5'- -cCAGCgcgggCCGccGACuCCGCCGCc-GCCg -3' miRNA: 3'- auGUCGa----GGUa-CUG-GGCGGCGaaCGG- -5' |
|||||||
23567 | 3' | -57.7 | NC_005261.1 | + | 155 | 0.66 | 0.8187 |
Target: 5'- cGCGGgaCCAgGACCgcUGCCGCc-GCCg -3' miRNA: 3'- aUGUCgaGGUaCUGG--GCGGCGaaCGG- -5' |
|||||||
23567 | 3' | -57.7 | NC_005261.1 | + | 116445 | 0.66 | 0.8187 |
Target: 5'- gGCGGCUgCGgcGGCCCgcGCCGCggcgGCUc -3' miRNA: 3'- aUGUCGAgGUa-CUGGG--CGGCGaa--CGG- -5' |
|||||||
23567 | 3' | -57.7 | NC_005261.1 | + | 33309 | 0.66 | 0.8187 |
Target: 5'- cGCGGgaCCAgGACCgcUGCCGCc-GCCg -3' miRNA: 3'- aUGUCgaGGUaCUGG--GCGGCGaaCGG- -5' |
|||||||
23567 | 3' | -57.7 | NC_005261.1 | + | 39313 | 0.66 | 0.8187 |
Target: 5'- cGCGGUUCCucgcguccaACCgCGCCGCcgcgGCCa -3' miRNA: 3'- aUGUCGAGGuac------UGG-GCGGCGaa--CGG- -5' |
|||||||
23567 | 3' | -57.7 | NC_005261.1 | + | 32264 | 0.66 | 0.8187 |
Target: 5'- aGCcGCacgCCGaGGCgCCGCCGCUggUGCUg -3' miRNA: 3'- aUGuCGa--GGUaCUG-GGCGGCGA--ACGG- -5' |
|||||||
23567 | 3' | -57.7 | NC_005261.1 | + | 136781 | 0.66 | 0.8187 |
Target: 5'- aGCcGCacgCCGaGGCgCCGCCGCUggUGCUg -3' miRNA: 3'- aUGuCGa--GGUaCUG-GGCGGCGA--ACGG- -5' |
|||||||
23567 | 3' | -57.7 | NC_005261.1 | + | 95493 | 0.66 | 0.8187 |
Target: 5'- cGCGGCggCAUcGACCCGCgGCcauuccgcGCCa -3' miRNA: 3'- aUGUCGagGUA-CUGGGCGgCGaa------CGG- -5' |
|||||||
23567 | 3' | -57.7 | NC_005261.1 | + | 20135 | 0.66 | 0.8187 |
Target: 5'- aGCGGCUCCGcgagcgcucaGGCCgCGCCgGCUcucUGCUc -3' miRNA: 3'- aUGUCGAGGUa---------CUGG-GCGG-CGA---ACGG- -5' |
|||||||
23567 | 3' | -57.7 | NC_005261.1 | + | 36572 | 0.66 | 0.8187 |
Target: 5'- --gAGCUgagCGggGGCCCGCCGCg-GCCa -3' miRNA: 3'- augUCGAg--GUa-CUGGGCGGCGaaCGG- -5' |
|||||||
23567 | 3' | -57.7 | NC_005261.1 | + | 70538 | 0.66 | 0.8187 |
Target: 5'- gGCGGCgcccgcgCCcc-ACCCGCCGCagggcGCCg -3' miRNA: 3'- aUGUCGa------GGuacUGGGCGGCGaa---CGG- -5' |
|||||||
23567 | 3' | -57.7 | NC_005261.1 | + | 10963 | 0.66 | 0.8187 |
Target: 5'- cGCGGCgggcgGGCCCGCCGUagcGCUg -3' miRNA: 3'- aUGUCGagguaCUGGGCGGCGaa-CGG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home