miRNA display CGI


Results 1 - 20 of 394 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23567 3' -57.7 NC_005261.1 + 11928 0.66 0.8187
Target:  5'- gGCGGCUgCGgcGGCCCgcGCCGCggcgGCUc -3'
miRNA:   3'- aUGUCGAgGUa-CUGGG--CGGCGaa--CGG- -5'
23567 3' -57.7 NC_005261.1 + 116445 0.66 0.8187
Target:  5'- gGCGGCUgCGgcGGCCCgcGCCGCggcgGCUc -3'
miRNA:   3'- aUGUCGAgGUa-CUGGG--CGGCGaa--CGG- -5'
23567 3' -57.7 NC_005261.1 + 63337 0.66 0.8187
Target:  5'- -cCAGCgcgggCCGccGACuCCGCCGCc-GCCg -3'
miRNA:   3'- auGUCGa----GGUa-CUG-GGCGGCGaaCGG- -5'
23567 3' -57.7 NC_005261.1 + 46068 0.66 0.8187
Target:  5'- gGCGGCUCCAccGagCGCgCGCUcGCCg -3'
miRNA:   3'- aUGUCGAGGUacUggGCG-GCGAaCGG- -5'
23567 3' -57.7 NC_005261.1 + 32264 0.66 0.8187
Target:  5'- aGCcGCacgCCGaGGCgCCGCCGCUggUGCUg -3'
miRNA:   3'- aUGuCGa--GGUaCUG-GGCGGCGA--ACGG- -5'
23567 3' -57.7 NC_005261.1 + 33309 0.66 0.8187
Target:  5'- cGCGGgaCCAgGACCgcUGCCGCc-GCCg -3'
miRNA:   3'- aUGUCgaGGUaCUGG--GCGGCGaaCGG- -5'
23567 3' -57.7 NC_005261.1 + 30317 0.66 0.8187
Target:  5'- cGCGGCacUCGUGGCCgagGCCGCg-GCCg -3'
miRNA:   3'- aUGUCGa-GGUACUGGg--CGGCGaaCGG- -5'
23567 3' -57.7 NC_005261.1 + 10963 0.66 0.8187
Target:  5'- cGCGGCgggcgGGCCCGCCGUagcGCUg -3'
miRNA:   3'- aUGUCGagguaCUGGGCGGCGaa-CGG- -5'
23567 3' -57.7 NC_005261.1 + 81418 0.66 0.8187
Target:  5'- cGCGGCaccaggaacaCCGUGGCCCGCUGCcggaaguggGCa -3'
miRNA:   3'- aUGUCGa---------GGUACUGGGCGGCGaa-------CGg -5'
23567 3' -57.7 NC_005261.1 + 39313 0.66 0.8187
Target:  5'- cGCGGUUCCucgcguccaACCgCGCCGCcgcgGCCa -3'
miRNA:   3'- aUGUCGAGGuac------UGG-GCGGCGaa--CGG- -5'
23567 3' -57.7 NC_005261.1 + 94735 0.66 0.8187
Target:  5'- cGCAGCg-CAgGAggUCCGCCGCgaagGCCu -3'
miRNA:   3'- aUGUCGagGUaCU--GGGCGGCGaa--CGG- -5'
23567 3' -57.7 NC_005261.1 + 155 0.66 0.8187
Target:  5'- cGCGGgaCCAgGACCgcUGCCGCc-GCCg -3'
miRNA:   3'- aUGUCgaGGUaCUGG--GCGGCGaaCGG- -5'
23567 3' -57.7 NC_005261.1 + 35930 0.66 0.8187
Target:  5'- cGCGGCgcgcggCUAcGACCCgcgGCCGCUggcgcggcagGCCg -3'
miRNA:   3'- aUGUCGa-----GGUaCUGGG---CGGCGAa---------CGG- -5'
23567 3' -57.7 NC_005261.1 + 70538 0.66 0.8187
Target:  5'- gGCGGCgcccgcgCCcc-ACCCGCCGCagggcGCCg -3'
miRNA:   3'- aUGUCGa------GGuacUGGGCGGCGaa---CGG- -5'
23567 3' -57.7 NC_005261.1 + 36572 0.66 0.8187
Target:  5'- --gAGCUgagCGggGGCCCGCCGCg-GCCa -3'
miRNA:   3'- augUCGAg--GUa-CUGGGCGGCGaaCGG- -5'
23567 3' -57.7 NC_005261.1 + 20135 0.66 0.8187
Target:  5'- aGCGGCUCCGcgagcgcucaGGCCgCGCCgGCUcucUGCUc -3'
miRNA:   3'- aUGUCGAGGUa---------CUGG-GCGG-CGA---ACGG- -5'
23567 3' -57.7 NC_005261.1 + 136781 0.66 0.8187
Target:  5'- aGCcGCacgCCGaGGCgCCGCCGCUggUGCUg -3'
miRNA:   3'- aUGuCGa--GGUaCUG-GGCGGCGA--ACGG- -5'
23567 3' -57.7 NC_005261.1 + 137826 0.66 0.8187
Target:  5'- cGCGGgaCCAgGACCgcUGCCGCc-GCCg -3'
miRNA:   3'- aUGUCgaGGUaCUGG--GCGGCGaaCGG- -5'
23567 3' -57.7 NC_005261.1 + 95493 0.66 0.8187
Target:  5'- cGCGGCggCAUcGACCCGCgGCcauuccgcGCCa -3'
miRNA:   3'- aUGUCGagGUA-CUGGGCGgCGaa------CGG- -5'
23567 3' -57.7 NC_005261.1 + 51920 0.66 0.8187
Target:  5'- cGCAGCggCCGcGGCCUGgucCCGCUcgucGCCg -3'
miRNA:   3'- aUGUCGa-GGUaCUGGGC---GGCGAa---CGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.