miRNA display CGI


Results 1 - 20 of 231 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23569 3' -64.7 NC_005261.1 + 87184 0.65 0.469432
Target:  5'- cCGCCGUGguaggcGCCUccaggaacagcgccGGGuGGCGCUcGCCGAg -3'
miRNA:   3'- -GUGGCGC------CGGA--------------CCC-CCGCGAaCGGUU- -5'
23569 3' -64.7 NC_005261.1 + 118294 0.65 0.469432
Target:  5'- cCGCCGCGGgCaccGGGGcgcacuuccgcaccGCGCUgcugGCCAu -3'
miRNA:   3'- -GUGGCGCCgGa--CCCC--------------CGCGAa---CGGUu -5'
23569 3' -64.7 NC_005261.1 + 117936 0.66 0.466717
Target:  5'- gGCUGCGGCCcgUGcgcgcucgcugcuacGGGcGCGCUcgcUGCCAu -3'
miRNA:   3'- gUGGCGCCGG--AC---------------CCC-CGCGA---ACGGUu -5'
23569 3' -64.7 NC_005261.1 + 30335 0.66 0.465814
Target:  5'- gGCCGCGGCCgcGGacaagcgggccgcGGGCGCgagcgcgcgggcgGCCGg -3'
miRNA:   3'- gUGGCGCCGGa-CC-------------CCCGCGaa-----------CGGUu -5'
23569 3' -64.7 NC_005261.1 + 5487 0.66 0.46311
Target:  5'- --gCGCGcGCCgGGGGGUaGCUgggGCCGc -3'
miRNA:   3'- gugGCGC-CGGaCCCCCG-CGAa--CGGUu -5'
23569 3' -64.7 NC_005261.1 + 110004 0.66 0.46311
Target:  5'- --gCGCGcGCCgGGGGGUaGCUgggGCCGc -3'
miRNA:   3'- gugGCGC-CGGaCCCCCG-CGAa--CGGUu -5'
23569 3' -64.7 NC_005261.1 + 22369 0.66 0.46311
Target:  5'- uGCCggGCGcGCCUcggcGGGGGCcGCgcggGCCAAc -3'
miRNA:   3'- gUGG--CGC-CGGA----CCCCCG-CGaa--CGGUU- -5'
23569 3' -64.7 NC_005261.1 + 33867 0.66 0.46311
Target:  5'- gGCCgGCGGCUguucucgcGGGcGGCGCUgcgcgacgGCCGg -3'
miRNA:   3'- gUGG-CGCCGGa-------CCC-CCGCGAa-------CGGUu -5'
23569 3' -64.7 NC_005261.1 + 126070 0.66 0.46311
Target:  5'- aGCCGCccgccGGCCUcGGcGGGCGCgc-CCAu -3'
miRNA:   3'- gUGGCG-----CCGGA-CC-CCCGCGaacGGUu -5'
23569 3' -64.7 NC_005261.1 + 110245 0.66 0.46311
Target:  5'- gCGgCGCGGCgCccgGGGGGCuGCggGCCu- -3'
miRNA:   3'- -GUgGCGCCG-Ga--CCCCCG-CGaaCGGuu -5'
23569 3' -64.7 NC_005261.1 + 74280 0.66 0.46311
Target:  5'- -uCCGCGGCggGcGGGGCGgUcGCCGc -3'
miRNA:   3'- guGGCGCCGgaC-CCCCGCgAaCGGUu -5'
23569 3' -64.7 NC_005261.1 + 96846 0.66 0.459518
Target:  5'- gGCCGgGGUCgacggggggcucgGGGGGCGCggguagcgUGCgGAu -3'
miRNA:   3'- gUGGCgCCGGa------------CCCCCGCGa-------ACGgUU- -5'
23569 3' -64.7 NC_005261.1 + 53943 0.66 0.457727
Target:  5'- cCGCCGgGGCC-GGGGccgccggcggcaccuGCGCcaUGCCGGg -3'
miRNA:   3'- -GUGGCgCCGGaCCCC---------------CGCGa-ACGGUU- -5'
23569 3' -64.7 NC_005261.1 + 35304 0.66 0.454157
Target:  5'- gGCgGCGGCgCUGcgcgaagcggcGGaGGCGCUgcggGCCAGg -3'
miRNA:   3'- gUGgCGCCG-GAC-----------CC-CCGCGAa---CGGUU- -5'
23569 3' -64.7 NC_005261.1 + 133847 0.66 0.454157
Target:  5'- gCGCCGUGGCC-GGcGcGCGCgacUGCCGc -3'
miRNA:   3'- -GUGGCGCCGGaCCcC-CGCGa--ACGGUu -5'
23569 3' -64.7 NC_005261.1 + 71230 0.66 0.454157
Target:  5'- gCGCaCGCGGCCcucGGcGGCGCa-GCCGAg -3'
miRNA:   3'- -GUG-GCGCCGGac-CC-CCGCGaaCGGUU- -5'
23569 3' -64.7 NC_005261.1 + 122437 0.66 0.454157
Target:  5'- gCGgCGCuGGCCgcgcGGGcGGCGCccGCCAGc -3'
miRNA:   3'- -GUgGCG-CCGGa---CCC-CCGCGaaCGGUU- -5'
23569 3' -64.7 NC_005261.1 + 3213 0.66 0.454157
Target:  5'- cCGCCGCGGCCgcgUGcGGGCccGCcgcGCCAGg -3'
miRNA:   3'- -GUGGCGCCGG---ACcCCCG--CGaa-CGGUU- -5'
23569 3' -64.7 NC_005261.1 + 35553 0.66 0.454157
Target:  5'- gGCCGCGGCggacgcggcgCUGGGcgccgcggaggaGGUGCUgcggGCCGc -3'
miRNA:   3'- gUGGCGCCG----------GACCC------------CCGCGAa---CGGUu -5'
23569 3' -64.7 NC_005261.1 + 118868 0.66 0.453267
Target:  5'- -cCCGCGGcCCUGGccucggccaccgcGGGCGCgcuggugGCCu- -3'
miRNA:   3'- guGGCGCC-GGACC-------------CCCGCGaa-----CGGuu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.