Results 1 - 20 of 327 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
23570 | 5' | -60.5 | NC_005261.1 | + | 96251 | 0.66 | 0.73399 |
Target: 5'- gGGUGGUGCagcucccccucgaguACGaGgaCGACGCUGGCgCGg -3' miRNA: 3'- -CCACCACG---------------UGC-Cg-GCUGCGGUCGaGC- -5' |
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23570 | 5' | -60.5 | NC_005261.1 | + | 106011 | 0.66 | 0.73018 |
Target: 5'- --aGGccaccGcCGCGGCCGgcagcucgucggGCGCCAGCUCc -3' miRNA: 3'- ccaCCa----C-GUGCCGGC------------UGCGGUCGAGc -5' |
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23570 | 5' | -60.5 | NC_005261.1 | + | 46933 | 0.66 | 0.73018 |
Target: 5'- aGGaUGGUGCucacGCGGCCcGCggGCCAGUcCGc -3' miRNA: 3'- -CC-ACCACG----UGCCGGcUG--CGGUCGaGC- -5' |
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23570 | 5' | -60.5 | NC_005261.1 | + | 20147 | 0.66 | 0.73018 |
Target: 5'- -----aGCGCucaGGCCG-CGCCGGCUCu -3' miRNA: 3'- ccaccaCGUG---CCGGCuGCGGUCGAGc -5' |
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23570 | 5' | -60.5 | NC_005261.1 | + | 121485 | 0.66 | 0.73018 |
Target: 5'- gGGcUGGU-CAUGG-CGGCGCCcgcgcGGCUCGc -3' miRNA: 3'- -CC-ACCAcGUGCCgGCUGCGG-----UCGAGC- -5' |
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23570 | 5' | -60.5 | NC_005261.1 | + | 26176 | 0.66 | 0.73018 |
Target: 5'- --aGG-GCACGcCCGAagGCCGGCUCc -3' miRNA: 3'- ccaCCaCGUGCcGGCUg-CGGUCGAGc -5' |
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23570 | 5' | -60.5 | NC_005261.1 | + | 114558 | 0.66 | 0.73018 |
Target: 5'- cGGcGGggaGCGGCCGcCGCCGGaUCGc -3' miRNA: 3'- -CCaCCacgUGCCGGCuGCGGUCgAGC- -5' |
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23570 | 5' | -60.5 | NC_005261.1 | + | 70744 | 0.66 | 0.73018 |
Target: 5'- -----cGCGCGGCUGGCGgCGGCcgCGg -3' miRNA: 3'- ccaccaCGUGCCGGCUGCgGUCGa-GC- -5' |
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23570 | 5' | -60.5 | NC_005261.1 | + | 1494 | 0.66 | 0.73018 |
Target: 5'- --aGGccaccGcCGCGGCCGgcagcucgucggGCGCCAGCUCc -3' miRNA: 3'- ccaCCa----C-GUGCCGGC------------UGCGGUCGAGc -5' |
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23570 | 5' | -60.5 | NC_005261.1 | + | 83310 | 0.66 | 0.73018 |
Target: 5'- gGGUcGUGCAgcuCGGgCGGCGCCAcGC-CGc -3' miRNA: 3'- -CCAcCACGU---GCCgGCUGCGGU-CGaGC- -5' |
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23570 | 5' | -60.5 | NC_005261.1 | + | 59389 | 0.66 | 0.73018 |
Target: 5'- cGGcGG-GCGCcGCCGGCGUaccagCAGCUCc -3' miRNA: 3'- -CCaCCaCGUGcCGGCUGCG-----GUCGAGc -5' |
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23570 | 5' | -60.5 | NC_005261.1 | + | 95792 | 0.66 | 0.73018 |
Target: 5'- --cGGcGCGCugcuaGCCGGCGCCGGCg-- -3' miRNA: 3'- ccaCCaCGUGc----CGGCUGCGGUCGagc -5' |
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23570 | 5' | -60.5 | NC_005261.1 | + | 79737 | 0.66 | 0.73018 |
Target: 5'- --gGGcGCcaaaaGCGGCCGcGCGCCGGCcugCGg -3' miRNA: 3'- ccaCCaCG-----UGCCGGC-UGCGGUCGa--GC- -5' |
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23570 | 5' | -60.5 | NC_005261.1 | + | 64058 | 0.66 | 0.73018 |
Target: 5'- cGUGGUGCGCcaccGGCUGcCGCaCGGUggCGu -3' miRNA: 3'- cCACCACGUG----CCGGCuGCG-GUCGa-GC- -5' |
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23570 | 5' | -60.5 | NC_005261.1 | + | 13726 | 0.66 | 0.720603 |
Target: 5'- cGUGGaGCACGGUgGAC-CCGGaauuCUCGa -3' miRNA: 3'- cCACCaCGUGCCGgCUGcGGUC----GAGC- -5' |
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23570 | 5' | -60.5 | NC_005261.1 | + | 71790 | 0.66 | 0.720603 |
Target: 5'- --cGGcgGCGCGcGCCG-CGCUGGuCUCGg -3' miRNA: 3'- ccaCCa-CGUGC-CGGCuGCGGUC-GAGC- -5' |
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23570 | 5' | -60.5 | NC_005261.1 | + | 102392 | 0.66 | 0.720603 |
Target: 5'- --cGGUGCGCcGCCuuuucuGCGCCgAGCUCu -3' miRNA: 3'- ccaCCACGUGcCGGc-----UGCGG-UCGAGc -5' |
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23570 | 5' | -60.5 | NC_005261.1 | + | 114335 | 0.66 | 0.720603 |
Target: 5'- aGGUGGacugGCucgaGCGGCgCGugGCCgcGGC-CGa -3' miRNA: 3'- -CCACCa---CG----UGCCG-GCugCGG--UCGaGC- -5' |
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23570 | 5' | -60.5 | NC_005261.1 | + | 97158 | 0.66 | 0.720603 |
Target: 5'- cGG-GGgcugGCgGCGGaCCGcgcCGCCGGCUCu -3' miRNA: 3'- -CCaCCa---CG-UGCC-GGCu--GCGGUCGAGc -5' |
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23570 | 5' | -60.5 | NC_005261.1 | + | 134753 | 0.66 | 0.720603 |
Target: 5'- cGUGGccccgcugGCGCGGUacuCGACGCgCGGCgCGg -3' miRNA: 3'- cCACCa-------CGUGCCG---GCUGCG-GUCGaGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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