miRNA display CGI


Results 41 - 60 of 436 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23573 3' -62.2 NC_005261.1 + 66039 0.66 0.624932
Target:  5'- aGUCGGCGGCCacggccaGCCcCGGGCccGC-GGu -3'
miRNA:   3'- gCAGCUGUCGG-------CGGcGCCCGa-CGaCC- -5'
23573 3' -62.2 NC_005261.1 + 118066 0.66 0.63572
Target:  5'- cCG-CGGCAGCgGCCGCaGccgcgcucGuCUGCUGGc -3'
miRNA:   3'- -GCaGCUGUCGgCGGCGcC--------C-GACGACC- -5'
23573 3' -62.2 NC_005261.1 + 75476 0.66 0.655318
Target:  5'- cCGggCGGCGGCgcggGCCGCuacgagcgcgGGGC-GCUGGa -3'
miRNA:   3'- -GCa-GCUGUCGg---CGGCG----------CCCGaCGACC- -5'
23573 3' -62.2 NC_005261.1 + 2359 0.66 0.625913
Target:  5'- uG-CGACAuccaggccacgcGCCGCCGCaGcGGCgcGCUGGc -3'
miRNA:   3'- gCaGCUGU------------CGGCGGCG-C-CCGa-CGACC- -5'
23573 3' -62.2 NC_005261.1 + 136461 0.66 0.655318
Target:  5'- aCG-CGGCAGCCccagacucGCgCGCGGGCaGCa-- -3'
miRNA:   3'- -GCaGCUGUCGG--------CG-GCGCCCGaCGacc -5'
23573 3' -62.2 NC_005261.1 + 85372 0.67 0.596545
Target:  5'- uGUUcGC-GCCGCCGCccucGGGCUuCUGGu -3'
miRNA:   3'- gCAGcUGuCGGCGGCG----CCCGAcGACC- -5'
23573 3' -62.2 NC_005261.1 + 20855 0.66 0.655318
Target:  5'- gCGU-GGCGGCucuugCGCCGCGGGCcgGCc-- -3'
miRNA:   3'- -GCAgCUGUCG-----GCGGCGCCCGa-CGacc -5'
23573 3' -62.2 NC_005261.1 + 31752 0.67 0.600452
Target:  5'- cCGUCgGGCAggcgcacguguaccuGCgCGCCGCGGuGCUGCc-- -3'
miRNA:   3'- -GCAG-CUGU---------------CG-GCGGCGCC-CGACGacc -5'
23573 3' -62.2 NC_005261.1 + 2527 0.66 0.606319
Target:  5'- uCGgggCGGCAGUaggccgccagCGCCGCGG-C-GCUGGg -3'
miRNA:   3'- -GCa--GCUGUCG----------GCGGCGCCcGaCGACC- -5'
23573 3' -62.2 NC_005261.1 + 136416 0.66 0.610234
Target:  5'- uGUCGG-AGCCGCagucgcaggcccccuCGCGGGCgucGCaGGg -3'
miRNA:   3'- gCAGCUgUCGGCG---------------GCGCCCGa--CGaCC- -5'
23573 3' -62.2 NC_005261.1 + 46254 0.66 0.61513
Target:  5'- cCG-CGGCGGCgGCCGCgaccguguccccgGGGCgcuCUGGc -3'
miRNA:   3'- -GCaGCUGUCGgCGGCG-------------CCCGac-GACC- -5'
23573 3' -62.2 NC_005261.1 + 123897 0.66 0.61611
Target:  5'- gCGgaaGGCcGCCGCUGUGGGgUGC-GGc -3'
miRNA:   3'- -GCag-CUGuCGGCGGCGCCCgACGaCC- -5'
23573 3' -62.2 NC_005261.1 + 89088 0.66 0.61611
Target:  5'- --cCGGCuGCgGCC-CGGGCgcGCUGGc -3'
miRNA:   3'- gcaGCUGuCGgCGGcGCCCGa-CGACC- -5'
23573 3' -62.2 NC_005261.1 + 94472 0.66 0.625913
Target:  5'- gCGUCGGC-GUCGucCCGCGGGCcggGCa-- -3'
miRNA:   3'- -GCAGCUGuCGGC--GGCGCCCGa--CGacc -5'
23573 3' -62.2 NC_005261.1 + 66252 0.66 0.625913
Target:  5'- cCGUCGucacCAGCaCGCCGUccaccGGGCgcccgcgGCUGu -3'
miRNA:   3'- -GCAGCu---GUCG-GCGGCG-----CCCGa------CGACc -5'
23573 3' -62.2 NC_005261.1 + 8794 0.66 0.63572
Target:  5'- uCGgCGgcuGCAGCCGCCGaGGGCUuGaaGGg -3'
miRNA:   3'- -GCaGC---UGUCGGCGGCgCCCGA-CgaCC- -5'
23573 3' -62.2 NC_005261.1 + 30370 0.66 0.63572
Target:  5'- cCGgcgCGcCGGgCGCCGCGGcGCgGgUGGa -3'
miRNA:   3'- -GCa--GCuGUCgGCGGCGCC-CGaCgACC- -5'
23573 3' -62.2 NC_005261.1 + 39324 0.66 0.645524
Target:  5'- gCGUCcaaccGC-GCCGCCGCGGccaaGCUGCgcgcGGc -3'
miRNA:   3'- -GCAGc----UGuCGGCGGCGCC----CGACGa---CC- -5'
23573 3' -62.2 NC_005261.1 + 110512 0.66 0.645524
Target:  5'- gCGUC-ACGGCCGUCGUcugcgGGGC-GCaGGa -3'
miRNA:   3'- -GCAGcUGUCGGCGGCG-----CCCGaCGaCC- -5'
23573 3' -62.2 NC_005261.1 + 135055 0.66 0.649443
Target:  5'- gCGgCGGCAGCgGCCcgccgcuuuccggcgGCGGGCUcGC-GGc -3'
miRNA:   3'- -GCaGCUGUCGgCGG---------------CGCCCGA-CGaCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.