miRNA display CGI


Results 1 - 20 of 294 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23575 3' -59.6 NC_005261.1 + 33339 0.66 0.764805
Target:  5'- gGCGUCCgggcgcacGCGGCgGCGAUCGa---CGCu -3'
miRNA:   3'- aCGCAGG--------CGCCG-CGCUAGCacagGUG- -5'
23575 3' -59.6 NC_005261.1 + 19641 0.66 0.764805
Target:  5'- cGCGagcUCCGCGGCggcgGCGcgCGccgCCGCg -3'
miRNA:   3'- aCGC---AGGCGCCG----CGCuaGCacaGGUG- -5'
23575 3' -59.6 NC_005261.1 + 13963 0.66 0.764805
Target:  5'- cGCGgCCGgGcGCGCGggCGgcgCCGCg -3'
miRNA:   3'- aCGCaGGCgC-CGCGCuaGCacaGGUG- -5'
23575 3' -59.6 NC_005261.1 + 84327 0.66 0.764805
Target:  5'- cGCGUCCGgGGCcGCGcUCGcgcaCGCg -3'
miRNA:   3'- aCGCAGGCgCCG-CGCuAGCacagGUG- -5'
23575 3' -59.6 NC_005261.1 + 99014 0.66 0.764805
Target:  5'- cGCGagCgGCGGCGCGGcggcgCGcGcCCACa -3'
miRNA:   3'- aCGCa-GgCGCCGCGCUa----GCaCaGGUG- -5'
23575 3' -59.6 NC_005261.1 + 21179 0.66 0.764805
Target:  5'- aUGCaG-CCGCuGGCGCGAgcgCGg--CCGCg -3'
miRNA:   3'- -ACG-CaGGCG-CCGCGCUa--GCacaGGUG- -5'
23575 3' -59.6 NC_005261.1 + 123686 0.66 0.764805
Target:  5'- -aCGUCC-CGGCGCucagCGUGggCCGCg -3'
miRNA:   3'- acGCAGGcGCCGCGcua-GCACa-GGUG- -5'
23575 3' -59.6 NC_005261.1 + 107955 0.66 0.764805
Target:  5'- aGCGUCCagGCGG-GCGcgCGggccgCCGCg -3'
miRNA:   3'- aCGCAGG--CGCCgCGCuaGCaca--GGUG- -5'
23575 3' -59.6 NC_005261.1 + 85555 0.66 0.764805
Target:  5'- -cCGUCUGCGGCgccGCGAgguUCGgcgCCGCg -3'
miRNA:   3'- acGCAGGCGCCG---CGCU---AGCacaGGUG- -5'
23575 3' -59.6 NC_005261.1 + 43986 0.66 0.764805
Target:  5'- cUGCG-CCGUGGC-C-AUCGUGgucgCCGCc -3'
miRNA:   3'- -ACGCaGGCGCCGcGcUAGCACa---GGUG- -5'
23575 3' -59.6 NC_005261.1 + 71868 0.66 0.764805
Target:  5'- gGCG-CCGgGGCGCGAgcucgCGcUGgCCAa -3'
miRNA:   3'- aCGCaGGCgCCGCGCUa----GC-ACaGGUg -5'
23575 3' -59.6 NC_005261.1 + 3438 0.66 0.764805
Target:  5'- aGCGUCCagGCGG-GCGcgCGggccgCCGCg -3'
miRNA:   3'- aCGCAGG--CGCCgCGCuaGCaca--GGUG- -5'
23575 3' -59.6 NC_005261.1 + 89630 0.66 0.764805
Target:  5'- cGCGgCCGCGcaCGCGGUgagCGUGUUCAa -3'
miRNA:   3'- aCGCaGGCGCc-GCGCUA---GCACAGGUg -5'
23575 3' -59.6 NC_005261.1 + 58653 0.66 0.755481
Target:  5'- aGCGcuacuUCCGCuucGGCGCGGacuaCGUGUaCUACg -3'
miRNA:   3'- aCGC-----AGGCG---CCGCGCUa---GCACA-GGUG- -5'
23575 3' -59.6 NC_005261.1 + 84224 0.66 0.755481
Target:  5'- aGCGcUCGCGGCgGCGccUGUGcgCCGCg -3'
miRNA:   3'- aCGCaGGCGCCG-CGCuaGCACa-GGUG- -5'
23575 3' -59.6 NC_005261.1 + 133834 0.66 0.755481
Target:  5'- cGCGgCCGCGuGCGCGc-CGUGgCCGg -3'
miRNA:   3'- aCGCaGGCGC-CGCGCuaGCACaGGUg -5'
23575 3' -59.6 NC_005261.1 + 19496 0.66 0.755481
Target:  5'- gGUGcUCgGCGaGCGCGAcgcCGUGcCCGCc -3'
miRNA:   3'- aCGC-AGgCGC-CGCGCUa--GCACaGGUG- -5'
23575 3' -59.6 NC_005261.1 + 64315 0.66 0.755481
Target:  5'- cGCGU-CGCGGC-CGuagcCGUGcCCGCg -3'
miRNA:   3'- aCGCAgGCGCCGcGCua--GCACaGGUG- -5'
23575 3' -59.6 NC_005261.1 + 57578 0.66 0.755481
Target:  5'- gGCG-CCGCGuugaGCGCG-UCGaUGUgCCACc -3'
miRNA:   3'- aCGCaGGCGC----CGCGCuAGC-ACA-GGUG- -5'
23575 3' -59.6 NC_005261.1 + 134898 0.66 0.755481
Target:  5'- gGCG-CCGCGGCGCGGguggagGUGgaggaCAUg -3'
miRNA:   3'- aCGCaGGCGCCGCGCUag----CACag---GUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.