Results 1 - 20 of 294 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
23575 | 3' | -59.6 | NC_005261.1 | + | 21179 | 0.66 | 0.764805 |
Target: 5'- aUGCaG-CCGCuGGCGCGAgcgCGg--CCGCg -3' miRNA: 3'- -ACG-CaGGCG-CCGCGCUa--GCacaGGUG- -5' |
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23575 | 3' | -59.6 | NC_005261.1 | + | 33339 | 0.66 | 0.764805 |
Target: 5'- gGCGUCCgggcgcacGCGGCgGCGAUCGa---CGCu -3' miRNA: 3'- aCGCAGG--------CGCCG-CGCUAGCacagGUG- -5' |
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23575 | 3' | -59.6 | NC_005261.1 | + | 19641 | 0.66 | 0.764805 |
Target: 5'- cGCGagcUCCGCGGCggcgGCGcgCGccgCCGCg -3' miRNA: 3'- aCGC---AGGCGCCG----CGCuaGCacaGGUG- -5' |
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23575 | 3' | -59.6 | NC_005261.1 | + | 13963 | 0.66 | 0.764805 |
Target: 5'- cGCGgCCGgGcGCGCGggCGgcgCCGCg -3' miRNA: 3'- aCGCaGGCgC-CGCGCuaGCacaGGUG- -5' |
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23575 | 3' | -59.6 | NC_005261.1 | + | 84327 | 0.66 | 0.764805 |
Target: 5'- cGCGUCCGgGGCcGCGcUCGcgcaCGCg -3' miRNA: 3'- aCGCAGGCgCCG-CGCuAGCacagGUG- -5' |
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23575 | 3' | -59.6 | NC_005261.1 | + | 3438 | 0.66 | 0.764805 |
Target: 5'- aGCGUCCagGCGG-GCGcgCGggccgCCGCg -3' miRNA: 3'- aCGCAGG--CGCCgCGCuaGCaca--GGUG- -5' |
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23575 | 3' | -59.6 | NC_005261.1 | + | 99014 | 0.66 | 0.764805 |
Target: 5'- cGCGagCgGCGGCGCGGcggcgCGcGcCCACa -3' miRNA: 3'- aCGCa-GgCGCCGCGCUa----GCaCaGGUG- -5' |
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23575 | 3' | -59.6 | NC_005261.1 | + | 123686 | 0.66 | 0.764805 |
Target: 5'- -aCGUCC-CGGCGCucagCGUGggCCGCg -3' miRNA: 3'- acGCAGGcGCCGCGcua-GCACa-GGUG- -5' |
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23575 | 3' | -59.6 | NC_005261.1 | + | 107955 | 0.66 | 0.764805 |
Target: 5'- aGCGUCCagGCGG-GCGcgCGggccgCCGCg -3' miRNA: 3'- aCGCAGG--CGCCgCGCuaGCaca--GGUG- -5' |
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23575 | 3' | -59.6 | NC_005261.1 | + | 85555 | 0.66 | 0.764805 |
Target: 5'- -cCGUCUGCGGCgccGCGAgguUCGgcgCCGCg -3' miRNA: 3'- acGCAGGCGCCG---CGCU---AGCacaGGUG- -5' |
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23575 | 3' | -59.6 | NC_005261.1 | + | 71868 | 0.66 | 0.764805 |
Target: 5'- gGCG-CCGgGGCGCGAgcucgCGcUGgCCAa -3' miRNA: 3'- aCGCaGGCgCCGCGCUa----GC-ACaGGUg -5' |
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23575 | 3' | -59.6 | NC_005261.1 | + | 89630 | 0.66 | 0.764805 |
Target: 5'- cGCGgCCGCGcaCGCGGUgagCGUGUUCAa -3' miRNA: 3'- aCGCaGGCGCc-GCGCUA---GCACAGGUg -5' |
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23575 | 3' | -59.6 | NC_005261.1 | + | 43986 | 0.66 | 0.764805 |
Target: 5'- cUGCG-CCGUGGC-C-AUCGUGgucgCCGCc -3' miRNA: 3'- -ACGCaGGCGCCGcGcUAGCACa---GGUG- -5' |
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23575 | 3' | -59.6 | NC_005261.1 | + | 57578 | 0.66 | 0.755481 |
Target: 5'- gGCG-CCGCGuugaGCGCG-UCGaUGUgCCACc -3' miRNA: 3'- aCGCaGGCGC----CGCGCuAGC-ACA-GGUG- -5' |
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23575 | 3' | -59.6 | NC_005261.1 | + | 134898 | 0.66 | 0.755481 |
Target: 5'- gGCG-CCGCGGCGCGGguggagGUGgaggaCAUg -3' miRNA: 3'- aCGCaGGCGCCGCGCUag----CACag---GUG- -5' |
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23575 | 3' | -59.6 | NC_005261.1 | + | 19496 | 0.66 | 0.755481 |
Target: 5'- gGUGcUCgGCGaGCGCGAcgcCGUGcCCGCc -3' miRNA: 3'- aCGC-AGgCGC-CGCGCUa--GCACaGGUG- -5' |
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23575 | 3' | -59.6 | NC_005261.1 | + | 133834 | 0.66 | 0.755481 |
Target: 5'- cGCGgCCGCGuGCGCGc-CGUGgCCGg -3' miRNA: 3'- aCGCaGGCGC-CGCGCuaGCACaGGUg -5' |
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23575 | 3' | -59.6 | NC_005261.1 | + | 64315 | 0.66 | 0.755481 |
Target: 5'- cGCGU-CGCGGC-CGuagcCGUGcCCGCg -3' miRNA: 3'- aCGCAgGCGCCGcGCua--GCACaGGUG- -5' |
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23575 | 3' | -59.6 | NC_005261.1 | + | 58653 | 0.66 | 0.755481 |
Target: 5'- aGCGcuacuUCCGCuucGGCGCGGacuaCGUGUaCUACg -3' miRNA: 3'- aCGC-----AGGCG---CCGCGCUa---GCACA-GGUG- -5' |
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23575 | 3' | -59.6 | NC_005261.1 | + | 84224 | 0.66 | 0.755481 |
Target: 5'- aGCGcUCGCGGCgGCGccUGUGcgCCGCg -3' miRNA: 3'- aCGCaGGCGCCG-CGCuaGCACa-GGUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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