miRNA display CGI


Results 1 - 20 of 352 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23576 3' -52.6 NC_005261.1 + 134859 0.66 0.975944
Target:  5'- cUGGCGGCCGcgcucgcggcccugaAGGccGGCGCGcCGGGCg-- -3'
miRNA:   3'- -ACUGCCGGC---------------UCU--UCGUGU-GCUUGaag -5'
23576 3' -52.6 NC_005261.1 + 30342 0.66 0.975944
Target:  5'- cUGGCGGCCGcgcucgcggcccugaAGGccGGCGCGcCGGGCg-- -3'
miRNA:   3'- -ACUGCCGGC---------------UCU--UCGUGU-GCUUGaag -5'
23576 3' -52.6 NC_005261.1 + 37239 0.66 0.974897
Target:  5'- -cGCGGCUGGcGGAGCGCgGCGAcgcGCUg- -3'
miRNA:   3'- acUGCCGGCU-CUUCGUG-UGCU---UGAag -5'
23576 3' -52.6 NC_005261.1 + 104355 0.66 0.974897
Target:  5'- gUGACGcGCCG-GAGGCGgGCGGc---- -3'
miRNA:   3'- -ACUGC-CGGCuCUUCGUgUGCUugaag -5'
23576 3' -52.6 NC_005261.1 + 134222 0.66 0.974897
Target:  5'- cGGCGGCCGGcagcgucggcGuGGCGCACGcGCc-- -3'
miRNA:   3'- aCUGCCGGCU----------CuUCGUGUGCuUGaag -5'
23576 3' -52.6 NC_005261.1 + 135813 0.66 0.974897
Target:  5'- cGACGcGCCguucGAGGAGUACAUcccugGGGCUUg -3'
miRNA:   3'- aCUGC-CGG----CUCUUCGUGUG-----CUUGAAg -5'
23576 3' -52.6 NC_005261.1 + 106240 0.66 0.974897
Target:  5'- cGGCGGCaCGGGcaccgcGGUGCGCGGGCc-- -3'
miRNA:   3'- aCUGCCG-GCUCu-----UCGUGUGCUUGaag -5'
23576 3' -52.6 NC_005261.1 + 102270 0.66 0.974897
Target:  5'- -aGCGGCCGAGcGGCcugGC-CGGGCUc- -3'
miRNA:   3'- acUGCCGGCUCuUCG---UGuGCUUGAag -5'
23576 3' -52.6 NC_005261.1 + 85940 0.66 0.974897
Target:  5'- aUGGCGGCCaGGgcGC-CGCGGaaGCUg- -3'
miRNA:   3'- -ACUGCCGGcUCuuCGuGUGCU--UGAag -5'
23576 3' -52.6 NC_005261.1 + 30242 0.66 0.974897
Target:  5'- cGACGGCgGGcuGGAGCAgACGAuccgccACUg- -3'
miRNA:   3'- aCUGCCGgCU--CUUCGUgUGCU------UGAag -5'
23576 3' -52.6 NC_005261.1 + 31662 0.66 0.974897
Target:  5'- cGGCGGCCccGGGGccGGCGCGCGccGGCc-- -3'
miRNA:   3'- aCUGCCGG--CUCU--UCGUGUGC--UUGaag -5'
23576 3' -52.6 NC_005261.1 + 88925 0.66 0.974897
Target:  5'- cGAgGGCUGcGcGGCGCucaccgccGCGGGCUUCu -3'
miRNA:   3'- aCUgCCGGCuCuUCGUG--------UGCUUGAAG- -5'
23576 3' -52.6 NC_005261.1 + 16369 0.66 0.974897
Target:  5'- -uGCGGCuCGgcGGGAGC-CGCGGGCUg- -3'
miRNA:   3'- acUGCCG-GC--UCUUCGuGUGCUUGAag -5'
23576 3' -52.6 NC_005261.1 + 26310 0.66 0.974897
Target:  5'- cGACugcaGGCCGAGc-GCGCACaGGGCggCg -3'
miRNA:   3'- aCUG----CCGGCUCuuCGUGUG-CUUGaaG- -5'
23576 3' -52.6 NC_005261.1 + 37549 0.66 0.974897
Target:  5'- -cGCGGCCGcGGugcacucGCGCGCGAACc-- -3'
miRNA:   3'- acUGCCGGCuCUu------CGUGUGCUUGaag -5'
23576 3' -52.6 NC_005261.1 + 125897 0.66 0.974897
Target:  5'- cGGCGGCCGcgccGGccAAGCGCGCGcccgccGGCUa- -3'
miRNA:   3'- aCUGCCGGC----UC--UUCGUGUGC------UUGAag -5'
23576 3' -52.6 NC_005261.1 + 98809 0.66 0.974897
Target:  5'- gGACGcGCCGGGGgacgggguGGCcGCugGGGCUcgggUCg -3'
miRNA:   3'- aCUGC-CGGCUCU--------UCG-UGugCUUGA----AG- -5'
23576 3' -52.6 NC_005261.1 + 93494 0.66 0.974897
Target:  5'- -cGCGGC---GAAGCGCGCGAACcgCg -3'
miRNA:   3'- acUGCCGgcuCUUCGUGUGCUUGaaG- -5'
23576 3' -52.6 NC_005261.1 + 118389 0.66 0.974897
Target:  5'- aGGaaGCCGAGGAcgccgcgcGCGCGCuGAACUUUu -3'
miRNA:   3'- aCUgcCGGCUCUU--------CGUGUG-CUUGAAG- -5'
23576 3' -52.6 NC_005261.1 + 67298 0.66 0.974897
Target:  5'- cGGCGGaCGcGcAGGCGCugGAGCUc- -3'
miRNA:   3'- aCUGCCgGCuC-UUCGUGugCUUGAag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.