miRNA display CGI


Results 1 - 20 of 352 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23576 3' -52.6 NC_005261.1 + 30342 0.66 0.975944
Target:  5'- cUGGCGGCCGcgcucgcggcccugaAGGccGGCGCGcCGGGCg-- -3'
miRNA:   3'- -ACUGCCGGC---------------UCU--UCGUGU-GCUUGaag -5'
23576 3' -52.6 NC_005261.1 + 114374 0.66 0.969161
Target:  5'- cGGUGGCCGAGAAGUACGu--GCUc- -3'
miRNA:   3'- aCUGCCGGCUCUUCGUGUgcuUGAag -5'
23576 3' -52.6 NC_005261.1 + 86945 0.66 0.969161
Target:  5'- cGGCGGgcuggucaaagaCCGuGAAGCACACGuccgGCggCa -3'
miRNA:   3'- aCUGCC------------GGCuCUUCGUGUGCu---UGaaG- -5'
23576 3' -52.6 NC_005261.1 + 114783 1.1 0.004418
Target:  5'- aUGACGGCCGAGAAGCACACGAACUUCu -3'
miRNA:   3'- -ACUGCCGGCUCUUCGUGUGCUUGAAG- -5'
23576 3' -52.6 NC_005261.1 + 134222 0.66 0.974897
Target:  5'- cGGCGGCCGGcagcgucggcGuGGCGCACGcGCc-- -3'
miRNA:   3'- aCUGCCGGCU----------CuUCGUGUGCuUGaag -5'
23576 3' -52.6 NC_005261.1 + 122633 0.66 0.974897
Target:  5'- cGGCGaGCgCGAGGcccGGCGCGCGuACg-- -3'
miRNA:   3'- aCUGC-CG-GCUCU---UCGUGUGCuUGaag -5'
23576 3' -52.6 NC_005261.1 + 1723 0.66 0.974897
Target:  5'- cGGCGGCaCGGGcaccgcGGUGCGCGGGCc-- -3'
miRNA:   3'- aCUGCCG-GCUCu-----UCGUGUGCUUGaag -5'
23576 3' -52.6 NC_005261.1 + 59508 0.66 0.97409
Target:  5'- cGGCGGUCGcacgcgcgcccuGGAgcAGCcccgccgccaccgcGCGCGGGCUUCu -3'
miRNA:   3'- aCUGCCGGC------------UCU--UCG--------------UGUGCUUGAAG- -5'
23576 3' -52.6 NC_005261.1 + 5873 0.66 0.972135
Target:  5'- cGACGGa-GAGAGGCugGCuGGCUc- -3'
miRNA:   3'- aCUGCCggCUCUUCGugUGcUUGAag -5'
23576 3' -52.6 NC_005261.1 + 122910 0.66 0.969161
Target:  5'- gGACGGCguuGGAGCGCAcgcCGAGCa-- -3'
miRNA:   3'- aCUGCCGgcuCUUCGUGU---GCUUGaag -5'
23576 3' -52.6 NC_005261.1 + 108446 0.66 0.971848
Target:  5'- --cCGGCCGAGcAGCGCgucgucgGCGAGgaUCu -3'
miRNA:   3'- acuGCCGGCUCuUCGUG-------UGCUUgaAG- -5'
23576 3' -52.6 NC_005261.1 + 63009 0.66 0.972135
Target:  5'- cGGCGGCCGcGcc-CGCGCGGGCg-- -3'
miRNA:   3'- aCUGCCGGCuCuucGUGUGCUUGaag -5'
23576 3' -52.6 NC_005261.1 + 93494 0.66 0.974897
Target:  5'- -cGCGGC---GAAGCGCGCGAACcgCg -3'
miRNA:   3'- acUGCCGgcuCUUCGUGUGCUUGaaG- -5'
23576 3' -52.6 NC_005261.1 + 97120 0.66 0.969161
Target:  5'- -cGCGGCCG-GAGGCGcCGCGGccacGCUc- -3'
miRNA:   3'- acUGCCGGCuCUUCGU-GUGCU----UGAag -5'
23576 3' -52.6 NC_005261.1 + 85940 0.66 0.974897
Target:  5'- aUGGCGGCCaGGgcGC-CGCGGaaGCUg- -3'
miRNA:   3'- -ACUGCCGGcUCuuCGuGUGCU--UGAag -5'
23576 3' -52.6 NC_005261.1 + 66690 0.66 0.972135
Target:  5'- cGGCGGCgauCGAGAAggccGCGCucaGCGAGCg-- -3'
miRNA:   3'- aCUGCCG---GCUCUU----CGUG---UGCUUGaag -5'
23576 3' -52.6 NC_005261.1 + 5281 0.66 0.969161
Target:  5'- aUGGcCGGCCGcGguGCGCGCGggUc-- -3'
miRNA:   3'- -ACU-GCCGGCuCuuCGUGUGCuuGaag -5'
23576 3' -52.6 NC_005261.1 + 90728 0.66 0.969161
Target:  5'- cGACcgcugGGCCGcgccuGAGGCGCugGcgcggGACUUCc -3'
miRNA:   3'- aCUG-----CCGGCu----CUUCGUGugC-----UUGAAG- -5'
23576 3' -52.6 NC_005261.1 + 135813 0.66 0.974897
Target:  5'- cGACGcGCCguucGAGGAGUACAUcccugGGGCUUg -3'
miRNA:   3'- aCUGC-CGG----CUCUUCGUGUG-----CUUGAAg -5'
23576 3' -52.6 NC_005261.1 + 44030 0.66 0.974897
Target:  5'- gGGCGGCCGccgcgcGGcGGC-CGCGGGCg-- -3'
miRNA:   3'- aCUGCCGGC------UCuUCGuGUGCUUGaag -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.