Results 1 - 20 of 1223 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
23576 | 5' | -59.1 | NC_005261.1 | + | 67487 | 0.65 | 0.800011 |
Target: 5'- cCCGCGGcCGCCGCCagccGCGCGuaguaGGCcagcgucGCCGc -3' miRNA: 3'- -GGCGUC-GUGGUGGa---UGUGC-----CCG-------UGGC- -5' |
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23576 | 5' | -59.1 | NC_005261.1 | + | 36836 | 0.65 | 0.800011 |
Target: 5'- -aGCGGCGCUG-CUGCugGcggccguggaggaGGCGCCGg -3' miRNA: 3'- ggCGUCGUGGUgGAUGugC-------------CCGUGGC- -5' |
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23576 | 5' | -59.1 | NC_005261.1 | + | 127761 | 0.65 | 0.799134 |
Target: 5'- gCCGCGGCGggcgcgaagacgcCCGgCUGCucgagcgGCGGGCcggcGCCGc -3' miRNA: 3'- -GGCGUCGU-------------GGUgGAUG-------UGCCCG----UGGC- -5' |
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23576 | 5' | -59.1 | NC_005261.1 | + | 77039 | 0.66 | 0.795611 |
Target: 5'- gCCGCGcGCGCggcccucggcgaccgCGCCUggccggugccGCGCGaGGCGCUGg -3' miRNA: 3'- -GGCGU-CGUG---------------GUGGA----------UGUGC-CCGUGGC- -5' |
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23576 | 5' | -59.1 | NC_005261.1 | + | 92526 | 0.66 | 0.792065 |
Target: 5'- gUCGCGGaACC-CCUGCGCggcgagGGGC-CCGu -3' miRNA: 3'- -GGCGUCgUGGuGGAUGUG------CCCGuGGC- -5' |
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23576 | 5' | -59.1 | NC_005261.1 | + | 7660 | 0.66 | 0.792065 |
Target: 5'- gCGCGGCGgCGCUUccGCccgGCGGGcCGCCc -3' miRNA: 3'- gGCGUCGUgGUGGA--UG---UGCCC-GUGGc -5' |
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23576 | 5' | -59.1 | NC_005261.1 | + | 93512 | 0.66 | 0.792065 |
Target: 5'- gCUGCAGCGC--CCUGCGCGcGUcaGCCGu -3' miRNA: 3'- -GGCGUCGUGguGGAUGUGCcCG--UGGC- -5' |
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23576 | 5' | -59.1 | NC_005261.1 | + | 26146 | 0.66 | 0.792065 |
Target: 5'- aCCGC-GCACCACgugGCGCccucgccgacgaGGGCACg- -3' miRNA: 3'- -GGCGuCGUGGUGga-UGUG------------CCCGUGgc -5' |
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23576 | 5' | -59.1 | NC_005261.1 | + | 87819 | 0.66 | 0.792065 |
Target: 5'- -aGCGGC-CCGCg-ACGCGgGGCuGCCGg -3' miRNA: 3'- ggCGUCGuGGUGgaUGUGC-CCG-UGGC- -5' |
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23576 | 5' | -59.1 | NC_005261.1 | + | 73447 | 0.66 | 0.792065 |
Target: 5'- gCGCuGCGCCGCacguCGUGGcGCGCCGc -3' miRNA: 3'- gGCGuCGUGGUGgau-GUGCC-CGUGGC- -5' |
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23576 | 5' | -59.1 | NC_005261.1 | + | 30941 | 0.66 | 0.792065 |
Target: 5'- gCCGCGGCggagugccuGCCGCCUgauGCGCGccCGCCc -3' miRNA: 3'- -GGCGUCG---------UGGUGGA---UGUGCccGUGGc -5' |
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23576 | 5' | -59.1 | NC_005261.1 | + | 65094 | 0.66 | 0.792065 |
Target: 5'- -gGCGGCGCgaGCCcgGCcCGGGgACCGc -3' miRNA: 3'- ggCGUCGUGg-UGGa-UGuGCCCgUGGC- -5' |
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23576 | 5' | -59.1 | NC_005261.1 | + | 9037 | 0.66 | 0.792065 |
Target: 5'- -aGCAGCugCGCC-ACGCGcuGGcCugCGg -3' miRNA: 3'- ggCGUCGugGUGGaUGUGC--CC-GugGC- -5' |
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23576 | 5' | -59.1 | NC_005261.1 | + | 110851 | 0.66 | 0.792065 |
Target: 5'- gCCGC-GUACCcCCUGCccacCGGccucGCGCCGg -3' miRNA: 3'- -GGCGuCGUGGuGGAUGu---GCC----CGUGGC- -5' |
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23576 | 5' | -59.1 | NC_005261.1 | + | 94556 | 0.66 | 0.792065 |
Target: 5'- gCCGUGGaGCCG-CUGCAUGGGCGacUCGa -3' miRNA: 3'- -GGCGUCgUGGUgGAUGUGCCCGU--GGC- -5' |
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23576 | 5' | -59.1 | NC_005261.1 | + | 106833 | 0.66 | 0.792065 |
Target: 5'- gUCGUagAGCACCACC-ACGCgcacguccucGGGguCCGc -3' miRNA: 3'- -GGCG--UCGUGGUGGaUGUG----------CCCguGGC- -5' |
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23576 | 5' | -59.1 | NC_005261.1 | + | 17265 | 0.66 | 0.792065 |
Target: 5'- gCgGCGGCACgCGCCc-CGCGgGGCGCg- -3' miRNA: 3'- -GgCGUCGUG-GUGGauGUGC-CCGUGgc -5' |
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23576 | 5' | -59.1 | NC_005261.1 | + | 29329 | 0.66 | 0.792065 |
Target: 5'- cCCGC-GCcCCGCUcGCcgGCGGGCAgCGc -3' miRNA: 3'- -GGCGuCGuGGUGGaUG--UGCCCGUgGC- -5' |
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23576 | 5' | -59.1 | NC_005261.1 | + | 49123 | 0.66 | 0.792065 |
Target: 5'- gCGCAGUGCCACgcGCGCGccagcGCGCCc -3' miRNA: 3'- gGCGUCGUGGUGgaUGUGCc----CGUGGc -5' |
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23576 | 5' | -59.1 | NC_005261.1 | + | 8287 | 0.66 | 0.792065 |
Target: 5'- gCUGCAgauGUACCACUcgg-UGGGCGCCGu -3' miRNA: 3'- -GGCGU---CGUGGUGGauguGCCCGUGGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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