Results 1 - 20 of 180 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
23577 | 5' | -54.2 | NC_005261.1 | + | 26052 | 0.66 | 0.950277 |
Target: 5'- gGCCAGCGAgCCccgCGcgCGGCCgGCGAaGAg -3' miRNA: 3'- -UGGUUGCU-GGa--GUa-GUCGG-CGCUaCU- -5' |
|||||||
23577 | 5' | -54.2 | NC_005261.1 | + | 71892 | 0.66 | 0.950277 |
Target: 5'- gGCCAAgaucgcaGACCUCGUgggcugcaCGGCCGCcucGGUGGc -3' miRNA: 3'- -UGGUUg------CUGGAGUA--------GUCGGCG---CUACU- -5' |
|||||||
23577 | 5' | -54.2 | NC_005261.1 | + | 79999 | 0.66 | 0.950277 |
Target: 5'- gGCCGAgGACC-CcgCcGCCGCGGg-- -3' miRNA: 3'- -UGGUUgCUGGaGuaGuCGGCGCUacu -5' |
|||||||
23577 | 5' | -54.2 | NC_005261.1 | + | 27608 | 0.66 | 0.950277 |
Target: 5'- cGCCGGCGGgCUC--CAGCCGCa---- -3' miRNA: 3'- -UGGUUGCUgGAGuaGUCGGCGcuacu -5' |
|||||||
23577 | 5' | -54.2 | NC_005261.1 | + | 34447 | 0.66 | 0.950277 |
Target: 5'- cACCGaagACGGCCUCG-CGGCCuG-GGUGGc -3' miRNA: 3'- -UGGU---UGCUGGAGUaGUCGG-CgCUACU- -5' |
|||||||
23577 | 5' | -54.2 | NC_005261.1 | + | 34055 | 0.66 | 0.950277 |
Target: 5'- cCCGACGACCcgCGcgCGGCgcccgcggacggCGCGGUGGc -3' miRNA: 3'- uGGUUGCUGGa-GUa-GUCG------------GCGCUACU- -5' |
|||||||
23577 | 5' | -54.2 | NC_005261.1 | + | 48382 | 0.66 | 0.950277 |
Target: 5'- cGCCGAUGAcgccgcggcCCUCcggccCGGCCGCGAa-- -3' miRNA: 3'- -UGGUUGCU---------GGAGua---GUCGGCGCUacu -5' |
|||||||
23577 | 5' | -54.2 | NC_005261.1 | + | 117036 | 0.66 | 0.950277 |
Target: 5'- gGCCAGCGuCCg---CGGCCGCGc--- -3' miRNA: 3'- -UGGUUGCuGGaguaGUCGGCGCuacu -5' |
|||||||
23577 | 5' | -54.2 | NC_005261.1 | + | 114056 | 0.66 | 0.945923 |
Target: 5'- cGCCGACGACCccccggaAGCCuGCGAcGAu -3' miRNA: 3'- -UGGUUGCUGGaguag--UCGG-CGCUaCU- -5' |
|||||||
23577 | 5' | -54.2 | NC_005261.1 | + | 75015 | 0.66 | 0.945923 |
Target: 5'- gGCCAAgGACCgcugCAUgAGCCG-GcUGAu -3' miRNA: 3'- -UGGUUgCUGGa---GUAgUCGGCgCuACU- -5' |
|||||||
23577 | 5' | -54.2 | NC_005261.1 | + | 25082 | 0.66 | 0.945923 |
Target: 5'- cGCuCGGCGAUCUCcacguUCAGCCGCc---- -3' miRNA: 3'- -UG-GUUGCUGGAGu----AGUCGGCGcuacu -5' |
|||||||
23577 | 5' | -54.2 | NC_005261.1 | + | 96612 | 0.66 | 0.945923 |
Target: 5'- cGCCGAgGGCCg---CAGCCGCuuuGUGGu -3' miRNA: 3'- -UGGUUgCUGGaguaGUCGGCGc--UACU- -5' |
|||||||
23577 | 5' | -54.2 | NC_005261.1 | + | 22369 | 0.66 | 0.945923 |
Target: 5'- uGCCgGGCGcGCCUCGgcgggGGCCGCGcgGGc -3' miRNA: 3'- -UGG-UUGC-UGGAGUag---UCGGCGCuaCU- -5' |
|||||||
23577 | 5' | -54.2 | NC_005261.1 | + | 118057 | 0.66 | 0.945923 |
Target: 5'- cGCUGGCGGCCgcggCAgcggccgCAGCCGCGc--- -3' miRNA: 3'- -UGGUUGCUGGa---GUa------GUCGGCGCuacu -5' |
|||||||
23577 | 5' | -54.2 | NC_005261.1 | + | 9539 | 0.66 | 0.945923 |
Target: 5'- cGCCGACGACCccccggaAGCCuGCGAcGAu -3' miRNA: 3'- -UGGUUGCUGGaguag--UCGG-CGCUaCU- -5' |
|||||||
23577 | 5' | -54.2 | NC_005261.1 | + | 87608 | 0.66 | 0.945923 |
Target: 5'- uGCCGGCGACCaccgcgaCGUUGGgCGCGAa-- -3' miRNA: 3'- -UGGUUGCUGGa------GUAGUCgGCGCUacu -5' |
|||||||
23577 | 5' | -54.2 | NC_005261.1 | + | 105227 | 0.66 | 0.945923 |
Target: 5'- gGCC-GCGGCCg---CGGCCGUGAUc- -3' miRNA: 3'- -UGGuUGCUGGaguaGUCGGCGCUAcu -5' |
|||||||
23577 | 5' | -54.2 | NC_005261.1 | + | 73207 | 0.66 | 0.945923 |
Target: 5'- gGCCccgGGCG-CCUCGagGGgCGCGGUGGc -3' miRNA: 3'- -UGG---UUGCuGGAGUagUCgGCGCUACU- -5' |
|||||||
23577 | 5' | -54.2 | NC_005261.1 | + | 134706 | 0.66 | 0.945923 |
Target: 5'- cGCCGagGCGGCCgccgCGcuggagCGGCCGCGcUGGc -3' miRNA: 3'- -UGGU--UGCUGGa---GUa-----GUCGGCGCuACU- -5' |
|||||||
23577 | 5' | -54.2 | NC_005261.1 | + | 77935 | 0.66 | 0.945923 |
Target: 5'- aGCCGACuGCCUgCG--GGCCGCGggGGc -3' miRNA: 3'- -UGGUUGcUGGA-GUagUCGGCGCuaCU- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home