miRNA display CGI


Results 1 - 20 of 180 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23577 5' -54.2 NC_005261.1 + 117036 0.66 0.950277
Target:  5'- gGCCAGCGuCCg---CGGCCGCGc--- -3'
miRNA:   3'- -UGGUUGCuGGaguaGUCGGCGCuacu -5'
23577 5' -54.2 NC_005261.1 + 48382 0.66 0.950277
Target:  5'- cGCCGAUGAcgccgcggcCCUCcggccCGGCCGCGAa-- -3'
miRNA:   3'- -UGGUUGCU---------GGAGua---GUCGGCGCUacu -5'
23577 5' -54.2 NC_005261.1 + 34055 0.66 0.950277
Target:  5'- cCCGACGACCcgCGcgCGGCgcccgcggacggCGCGGUGGc -3'
miRNA:   3'- uGGUUGCUGGa-GUa-GUCG------------GCGCUACU- -5'
23577 5' -54.2 NC_005261.1 + 34447 0.66 0.950277
Target:  5'- cACCGaagACGGCCUCG-CGGCCuG-GGUGGc -3'
miRNA:   3'- -UGGU---UGCUGGAGUaGUCGG-CgCUACU- -5'
23577 5' -54.2 NC_005261.1 + 27608 0.66 0.950277
Target:  5'- cGCCGGCGGgCUC--CAGCCGCa---- -3'
miRNA:   3'- -UGGUUGCUgGAGuaGUCGGCGcuacu -5'
23577 5' -54.2 NC_005261.1 + 79999 0.66 0.950277
Target:  5'- gGCCGAgGACC-CcgCcGCCGCGGg-- -3'
miRNA:   3'- -UGGUUgCUGGaGuaGuCGGCGCUacu -5'
23577 5' -54.2 NC_005261.1 + 71892 0.66 0.950277
Target:  5'- gGCCAAgaucgcaGACCUCGUgggcugcaCGGCCGCcucGGUGGc -3'
miRNA:   3'- -UGGUUg------CUGGAGUA--------GUCGGCG---CUACU- -5'
23577 5' -54.2 NC_005261.1 + 26052 0.66 0.950277
Target:  5'- gGCCAGCGAgCCccgCGcgCGGCCgGCGAaGAg -3'
miRNA:   3'- -UGGUUGCU-GGa--GUa-GUCGG-CGCUaCU- -5'
23577 5' -54.2 NC_005261.1 + 96612 0.66 0.945923
Target:  5'- cGCCGAgGGCCg---CAGCCGCuuuGUGGu -3'
miRNA:   3'- -UGGUUgCUGGaguaGUCGGCGc--UACU- -5'
23577 5' -54.2 NC_005261.1 + 22369 0.66 0.945923
Target:  5'- uGCCgGGCGcGCCUCGgcgggGGCCGCGcgGGc -3'
miRNA:   3'- -UGG-UUGC-UGGAGUag---UCGGCGCuaCU- -5'
23577 5' -54.2 NC_005261.1 + 9539 0.66 0.945923
Target:  5'- cGCCGACGACCccccggaAGCCuGCGAcGAu -3'
miRNA:   3'- -UGGUUGCUGGaguag--UCGG-CGCUaCU- -5'
23577 5' -54.2 NC_005261.1 + 25082 0.66 0.945923
Target:  5'- cGCuCGGCGAUCUCcacguUCAGCCGCc---- -3'
miRNA:   3'- -UG-GUUGCUGGAGu----AGUCGGCGcuacu -5'
23577 5' -54.2 NC_005261.1 + 75015 0.66 0.945923
Target:  5'- gGCCAAgGACCgcugCAUgAGCCG-GcUGAu -3'
miRNA:   3'- -UGGUUgCUGGa---GUAgUCGGCgCuACU- -5'
23577 5' -54.2 NC_005261.1 + 77935 0.66 0.945923
Target:  5'- aGCCGACuGCCUgCG--GGCCGCGggGGc -3'
miRNA:   3'- -UGGUUGcUGGA-GUagUCGGCGCuaCU- -5'
23577 5' -54.2 NC_005261.1 + 118057 0.66 0.945923
Target:  5'- cGCUGGCGGCCgcggCAgcggccgCAGCCGCGc--- -3'
miRNA:   3'- -UGGUUGCUGGa---GUa------GUCGGCGCuacu -5'
23577 5' -54.2 NC_005261.1 + 87608 0.66 0.945923
Target:  5'- uGCCGGCGACCaccgcgaCGUUGGgCGCGAa-- -3'
miRNA:   3'- -UGGUUGCUGGa------GUAGUCgGCGCUacu -5'
23577 5' -54.2 NC_005261.1 + 105227 0.66 0.945923
Target:  5'- gGCC-GCGGCCg---CGGCCGUGAUc- -3'
miRNA:   3'- -UGGuUGCUGGaguaGUCGGCGCUAcu -5'
23577 5' -54.2 NC_005261.1 + 134706 0.66 0.945923
Target:  5'- cGCCGagGCGGCCgccgCGcuggagCGGCCGCGcUGGc -3'
miRNA:   3'- -UGGU--UGCUGGa---GUa-----GUCGGCGCuACU- -5'
23577 5' -54.2 NC_005261.1 + 114056 0.66 0.945923
Target:  5'- cGCCGACGACCccccggaAGCCuGCGAcGAu -3'
miRNA:   3'- -UGGUUGCUGGaguag--UCGG-CGCUaCU- -5'
23577 5' -54.2 NC_005261.1 + 73207 0.66 0.945923
Target:  5'- gGCCccgGGCG-CCUCGagGGgCGCGGUGGc -3'
miRNA:   3'- -UGG---UUGCuGGAGUagUCgGCGCUACU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.