miRNA display CGI


Results 1 - 20 of 544 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23579 5' -60.4 NC_005261.1 + 23019 0.66 0.717229
Target:  5'- cACGaucGCGCCGcGGACGcacgGGCGCugGGC-Cg -3'
miRNA:   3'- -UGC---UGCGGUuCCUGCa---CCGCG--CCGaG- -5'
23579 5' -60.4 NC_005261.1 + 21875 0.66 0.717229
Target:  5'- cGCGGCGgCAcGGACGaacccgcacggGGCGauggGGCUCu -3'
miRNA:   3'- -UGCUGCgGUuCCUGCa----------CCGCg---CCGAG- -5'
23579 5' -60.4 NC_005261.1 + 6618 0.66 0.717229
Target:  5'- -gGGCGCCAGGcGcgcguACGUGcGCGCGcGCg- -3'
miRNA:   3'- ugCUGCGGUUC-C-----UGCAC-CGCGC-CGag -5'
23579 5' -60.4 NC_005261.1 + 69569 0.66 0.717229
Target:  5'- -gGACGCCGGcGGCGcgGGCGgCGGUg- -3'
miRNA:   3'- ugCUGCGGUUcCUGCa-CCGC-GCCGag -5'
23579 5' -60.4 NC_005261.1 + 131494 0.66 0.717229
Target:  5'- uCGACGCCuucuuccGGcACGUGcGCGCGcaGUUCa -3'
miRNA:   3'- uGCUGCGGuu-----CC-UGCAC-CGCGC--CGAG- -5'
23579 5' -60.4 NC_005261.1 + 54216 0.66 0.717229
Target:  5'- cCGAUGaCCAgcccgcAGGucACGcGGCGCGcGCUCa -3'
miRNA:   3'- uGCUGC-GGU------UCC--UGCaCCGCGC-CGAG- -5'
23579 5' -60.4 NC_005261.1 + 67670 0.66 0.717229
Target:  5'- cGCGGCGCCAGGcGCGgUGaGCGCGuCa- -3'
miRNA:   3'- -UGCUGCGGUUCcUGC-AC-CGCGCcGag -5'
23579 5' -60.4 NC_005261.1 + 86293 0.66 0.717229
Target:  5'- gUGGCGCCGgcgacgagcGGGACcaGGCcGCGGC-Cg -3'
miRNA:   3'- uGCUGCGGU---------UCCUGcaCCG-CGCCGaG- -5'
23579 5' -60.4 NC_005261.1 + 54351 0.66 0.717229
Target:  5'- uCGAUgGCCAgucccAGGuccGCG-GGCaGCGGCUCg -3'
miRNA:   3'- uGCUG-CGGU-----UCC---UGCaCCG-CGCCGAG- -5'
23579 5' -60.4 NC_005261.1 + 89093 0.66 0.717229
Target:  5'- uGCGGC-CCGGGcGCGcUGGCGCGcGCg- -3'
miRNA:   3'- -UGCUGcGGUUCcUGC-ACCGCGC-CGag -5'
23579 5' -60.4 NC_005261.1 + 37507 0.66 0.717229
Target:  5'- cGCG-CGCgCGcGcGGCGcGGcCGCGGCUCg -3'
miRNA:   3'- -UGCuGCG-GUuC-CUGCaCC-GCGCCGAG- -5'
23579 5' -60.4 NC_005261.1 + 109875 0.66 0.717229
Target:  5'- aGCGGgGCCcgcGGGCG-GGCGCcccggGGCUa -3'
miRNA:   3'- -UGCUgCGGuu-CCUGCaCCGCG-----CCGAg -5'
23579 5' -60.4 NC_005261.1 + 7428 0.66 0.716256
Target:  5'- uCGACGUauuGGGCGUcguccgcGGUGCGGC-Ca -3'
miRNA:   3'- uGCUGCGguuCCUGCA-------CCGCGCCGaG- -5'
23579 5' -60.4 NC_005261.1 + 75946 0.66 0.70747
Target:  5'- cGCGGCGCCGAcGuGAUGUaccacaacgGGCGCcGCUa -3'
miRNA:   3'- -UGCUGCGGUU-C-CUGCA---------CCGCGcCGAg -5'
23579 5' -60.4 NC_005261.1 + 20486 0.66 0.70747
Target:  5'- uCGGCGUUggGGGCGgcggcgccaGcGCGCGGC-Cg -3'
miRNA:   3'- uGCUGCGGuuCCUGCa--------C-CGCGCCGaG- -5'
23579 5' -60.4 NC_005261.1 + 79683 0.66 0.70747
Target:  5'- cACGACGgCGcAGGAgccCG-GGCGgCGGCUg -3'
miRNA:   3'- -UGCUGCgGU-UCCU---GCaCCGC-GCCGAg -5'
23579 5' -60.4 NC_005261.1 + 2522 0.66 0.70747
Target:  5'- uACGAgGCUggGcAgGUGGCGaGGCUUa -3'
miRNA:   3'- -UGCUgCGGuuCcUgCACCGCgCCGAG- -5'
23579 5' -60.4 NC_005261.1 + 49841 0.66 0.70747
Target:  5'- uCGcCGUCGAGGuACaccuugGGCGCGcGCUCg -3'
miRNA:   3'- uGCuGCGGUUCC-UGca----CCGCGC-CGAG- -5'
23579 5' -60.4 NC_005261.1 + 53583 0.66 0.70747
Target:  5'- gGCGGCGCCAgccGGGACaacacgcugGUGGagGC-GCUCc -3'
miRNA:   3'- -UGCUGCGGU---UCCUG---------CACCg-CGcCGAG- -5'
23579 5' -60.4 NC_005261.1 + 78201 0.66 0.70747
Target:  5'- uCGGCGCCGAcGGC--GGCG-GGCUCu -3'
miRNA:   3'- uGCUGCGGUUcCUGcaCCGCgCCGAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.