miRNA display CGI


Results 21 - 40 of 733 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23580 3' -65.7 NC_005261.1 + 134565 0.66 0.428253
Target:  5'- uGGGCGGCGccgcggcuGCGCagGGCGGgCCUgGCGa -3'
miRNA:   3'- -UCCGUCGCc-------CGCG--CCGCUgGGAgCGU- -5'
23580 3' -65.7 NC_005261.1 + 134553 0.69 0.293578
Target:  5'- -uGCAGCGGGcCGCGGCcugccggccgcGGCCUgCGCu -3'
miRNA:   3'- ucCGUCGCCC-GCGCCG-----------CUGGGaGCGu -5'
23580 3' -65.7 NC_005261.1 + 134488 0.66 0.44533
Target:  5'- gAGGCGGCGcGGUGCGcCG-CCggCGCGu -3'
miRNA:   3'- -UCCGUCGC-CCGCGCcGCuGGgaGCGU- -5'
23580 3' -65.7 NC_005261.1 + 134328 0.66 0.419861
Target:  5'- cGGCGgcGCGGGCGCccGCGccGCgCUCGCc -3'
miRNA:   3'- uCCGU--CGCCCGCGc-CGC--UGgGAGCGu -5'
23580 3' -65.7 NC_005261.1 + 134229 0.78 0.074236
Target:  5'- cGGCAGCGucGGCGUGGCGcacgcGCCCUgCGCGg -3'
miRNA:   3'- uCCGUCGC--CCGCGCCGC-----UGGGA-GCGU- -5'
23580 3' -65.7 NC_005261.1 + 133851 0.69 0.30677
Target:  5'- cGGCcGCGugcgcuucggcGGCGCgGGCGACaCUCGCGa -3'
miRNA:   3'- uCCGuCGC-----------CCGCG-CCGCUGgGAGCGU- -5'
23580 3' -65.7 NC_005261.1 + 133718 0.66 0.44533
Target:  5'- cGGCGcccgcGCgGGGCGCGacuGgGGCCCgCGCAg -3'
miRNA:   3'- uCCGU-----CG-CCCGCGC---CgCUGGGaGCGU- -5'
23580 3' -65.7 NC_005261.1 + 133692 0.7 0.239684
Target:  5'- aAGGCca-GGGCcCGGCG-CCCUCGCc -3'
miRNA:   3'- -UCCGucgCCCGcGCCGCuGGGAGCGu -5'
23580 3' -65.7 NC_005261.1 + 133388 0.66 0.460139
Target:  5'- cGGCccaCGGGCGC-GCGGCCCaaaacaaggcccgcUCGCu -3'
miRNA:   3'- uCCGuc-GCCCGCGcCGCUGGG--------------AGCGu -5'
23580 3' -65.7 NC_005261.1 + 133349 0.69 0.300118
Target:  5'- gAGGCGGcCGcGGCugaGGCGGCCgUCGUg -3'
miRNA:   3'- -UCCGUC-GC-CCGcg-CCGCUGGgAGCGu -5'
23580 3' -65.7 NC_005261.1 + 133340 0.69 0.293578
Target:  5'- cGGCAcGCGcGCGCGGCGcuGCCg-CGCAg -3'
miRNA:   3'- uCCGU-CGCcCGCGCCGC--UGGgaGCGU- -5'
23580 3' -65.7 NC_005261.1 + 133287 0.68 0.327399
Target:  5'- gGGGC-GCcuGGGcCGCGGCGcggGCgCUCGCGg -3'
miRNA:   3'- -UCCGuCG--CCC-GCGCCGC---UGgGAGCGU- -5'
23580 3' -65.7 NC_005261.1 + 133261 0.69 0.293578
Target:  5'- cAGGCGGCgcgcgaguaccaGGGCGcCGGCG-CCCgccUCGUg -3'
miRNA:   3'- -UCCGUCG------------CCCGC-GCCGCuGGG---AGCGu -5'
23580 3' -65.7 NC_005261.1 + 133097 0.66 0.454009
Target:  5'- gAGGCGcGCGaGCGcCGGCGGgCCgccCGCGc -3'
miRNA:   3'- -UCCGU-CGCcCGC-GCCGCUgGGa--GCGU- -5'
23580 3' -65.7 NC_005261.1 + 132899 0.69 0.280834
Target:  5'- cGGGCGccGCGGGCggcgccgaGCGGCGGCUCcUGCc -3'
miRNA:   3'- -UCCGU--CGCCCG--------CGCCGCUGGGaGCGu -5'
23580 3' -65.7 NC_005261.1 + 132642 0.66 0.419861
Target:  5'- gGGGCcucgaGGCGGGCGCccucGGCGcCCCcaucucCGCc -3'
miRNA:   3'- -UCCG-----UCGCCCGCG----CCGCuGGGa-----GCGu -5'
23580 3' -65.7 NC_005261.1 + 132624 0.84 0.024283
Target:  5'- gGGGCGcuggcgccgaggacGCGGGCGCGGCGGCCCUaGCGg -3'
miRNA:   3'- -UCCGU--------------CGCCCGCGCCGCUGGGAgCGU- -5'
23580 3' -65.7 NC_005261.1 + 132174 0.71 0.198952
Target:  5'- cAGGCAGCGcGG-GCGGgGGCCCgcaUUGCu -3'
miRNA:   3'- -UCCGUCGC-CCgCGCCgCUGGG---AGCGu -5'
23580 3' -65.7 NC_005261.1 + 132063 0.69 0.30677
Target:  5'- uGGCGGcCGaGGuCGCGGCcGCCgUCGCc -3'
miRNA:   3'- uCCGUC-GC-CC-GCGCCGcUGGgAGCGu -5'
23580 3' -65.7 NC_005261.1 + 132026 0.7 0.262547
Target:  5'- cAGGUcugGGCGGGCcaGCugGGCccGCCCUCGCAc -3'
miRNA:   3'- -UCCG---UCGCCCG--CG--CCGc-UGGGAGCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.