Results 1 - 20 of 549 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
23583 | 3' | -61.3 | NC_005261.1 | + | 66611 | 0.66 | 0.67805 |
Target: 5'- ---cCGCCGCCCgGgccCGCGCccgggccgCGGCg -3' miRNA: 3'- ucauGCGGCGGGaCac-GCGCGa-------GCCG- -5' |
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23583 | 3' | -61.3 | NC_005261.1 | + | 136438 | 0.66 | 0.67805 |
Target: 5'- cGGgGCGCCGCCgCUGcgGCucUGCcgCGGCg -3' miRNA: 3'- -UCaUGCGGCGG-GACa-CGc-GCGa-GCCG- -5' |
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23583 | 3' | -61.3 | NC_005261.1 | + | 50916 | 0.66 | 0.67805 |
Target: 5'- --gGCGCCGCCUcGccGgGCGCggGGCu -3' miRNA: 3'- ucaUGCGGCGGGaCa-CgCGCGagCCG- -5' |
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23583 | 3' | -61.3 | NC_005261.1 | + | 70514 | 0.66 | 0.67805 |
Target: 5'- cGGUGCGUCGCgCUGUcgGCGUaCGGg -3' miRNA: 3'- -UCAUGCGGCGgGACAcgCGCGaGCCg -5' |
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23583 | 3' | -61.3 | NC_005261.1 | + | 65644 | 0.66 | 0.67805 |
Target: 5'- ---cCGCCucucGCCuCUG-GCGCGCgcCGGCg -3' miRNA: 3'- ucauGCGG----CGG-GACaCGCGCGa-GCCG- -5' |
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23583 | 3' | -61.3 | NC_005261.1 | + | 118617 | 0.66 | 0.67805 |
Target: 5'- uGUGCGUgGUgCUG-GCGCGCUaccGCg -3' miRNA: 3'- uCAUGCGgCGgGACaCGCGCGAgc-CG- -5' |
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23583 | 3' | -61.3 | NC_005261.1 | + | 11271 | 0.66 | 0.67805 |
Target: 5'- cGGUucgcGCuGCCGCCCc---CGCGCcCGGCg -3' miRNA: 3'- -UCA----UG-CGGCGGGacacGCGCGaGCCG- -5' |
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23583 | 3' | -61.3 | NC_005261.1 | + | 26891 | 0.66 | 0.677064 |
Target: 5'- cGGUcgGCGCCgGCUCUuucuuuugaaaccGaGCGCGCggCGGCg -3' miRNA: 3'- -UCA--UGCGG-CGGGA-------------CaCGCGCGa-GCCG- -5' |
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23583 | 3' | -61.3 | NC_005261.1 | + | 106631 | 0.66 | 0.668173 |
Target: 5'- --aGCaGCaCGCCCUGcgcgccgaGCGCGCUcacgucCGGCg -3' miRNA: 3'- ucaUG-CG-GCGGGACa-------CGCGCGA------GCCG- -5' |
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23583 | 3' | -61.3 | NC_005261.1 | + | 7014 | 0.66 | 0.668173 |
Target: 5'- --cGCGCgGCCaCguacgcggGCGCGC-CGGCg -3' miRNA: 3'- ucaUGCGgCGG-Gaca-----CGCGCGaGCCG- -5' |
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23583 | 3' | -61.3 | NC_005261.1 | + | 53343 | 0.66 | 0.668173 |
Target: 5'- -cUGCGcCCGCCCccgcCGCGCuuUCGGCc -3' miRNA: 3'- ucAUGC-GGCGGGacacGCGCG--AGCCG- -5' |
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23583 | 3' | -61.3 | NC_005261.1 | + | 106946 | 0.66 | 0.668173 |
Target: 5'- --cGCGCaccucgGCCCgg-GCGCGCuccgccUCGGCg -3' miRNA: 3'- ucaUGCGg-----CGGGacaCGCGCG------AGCCG- -5' |
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23583 | 3' | -61.3 | NC_005261.1 | + | 125904 | 0.66 | 0.668173 |
Target: 5'- --cGCGCCGgCCaa-GCGCGCgcccgcCGGCu -3' miRNA: 3'- ucaUGCGGCgGGacaCGCGCGa-----GCCG- -5' |
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23583 | 3' | -61.3 | NC_005261.1 | + | 87582 | 0.66 | 0.668173 |
Target: 5'- --cGCGCCGCCCaggccgGUGgucuugGUGC-CGGCg -3' miRNA: 3'- ucaUGCGGCGGGa-----CACg-----CGCGaGCCG- -5' |
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23583 | 3' | -61.3 | NC_005261.1 | + | 47281 | 0.66 | 0.668173 |
Target: 5'- aAGaGCGCCGCgugccaCUGUGCGagcacgaGCaUGGCg -3' miRNA: 3'- -UCaUGCGGCGg-----GACACGCg------CGaGCCG- -5' |
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23583 | 3' | -61.3 | NC_005261.1 | + | 99278 | 0.66 | 0.668173 |
Target: 5'- -cUGCGCaGCCC---GCGCGCcgCGGCc -3' miRNA: 3'- ucAUGCGgCGGGacaCGCGCGa-GCCG- -5' |
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23583 | 3' | -61.3 | NC_005261.1 | + | 19183 | 0.66 | 0.668173 |
Target: 5'- --cGCGCgGCCgCgg-GCGCGUuaccgUCGGCg -3' miRNA: 3'- ucaUGCGgCGG-GacaCGCGCG-----AGCCG- -5' |
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23583 | 3' | -61.3 | NC_005261.1 | + | 38178 | 0.66 | 0.668173 |
Target: 5'- cGgcUGCCuggaGgCCUGgGCGCGCcgCGGCg -3' miRNA: 3'- uCauGCGG----CgGGACaCGCGCGa-GCCG- -5' |
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23583 | 3' | -61.3 | NC_005261.1 | + | 135746 | 0.66 | 0.668173 |
Target: 5'- uGGcGCGCCucaGCCgCgcgGUGCGCUcCGGCg -3' miRNA: 3'- -UCaUGCGG---CGG-GacaCGCGCGA-GCCG- -5' |
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23583 | 3' | -61.3 | NC_005261.1 | + | 133326 | 0.66 | 0.668173 |
Target: 5'- --cGCGCaGCuCCUGccggcacGCGCGCgCGGCg -3' miRNA: 3'- ucaUGCGgCG-GGACa------CGCGCGaGCCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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