miRNA display CGI


Results 1 - 20 of 557 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23584 3' -60 NC_005261.1 + 5114 0.66 0.767608
Target:  5'- cCGC-CaGCUCGgCGCGGGcggccCGCCgGCg -3'
miRNA:   3'- -GCGuGcUGAGCgGCGCCCa----GUGGaCG- -5'
23584 3' -60 NC_005261.1 + 25204 0.66 0.767608
Target:  5'- gCGCGCGGCcCGCUcuGUGGGgua-CUGCc -3'
miRNA:   3'- -GCGUGCUGaGCGG--CGCCCagugGACG- -5'
23584 3' -60 NC_005261.1 + 6645 0.66 0.767608
Target:  5'- gCGCGCGuaggccucgGC-CGUCGCGGGgggcaGCCggGCg -3'
miRNA:   3'- -GCGUGC---------UGaGCGGCGCCCag---UGGa-CG- -5'
23584 3' -60 NC_005261.1 + 36464 0.66 0.767608
Target:  5'- aCGCGCG-CUgGagGCGGGcgugCACCUGg -3'
miRNA:   3'- -GCGUGCuGAgCggCGCCCa---GUGGACg -5'
23584 3' -60 NC_005261.1 + 92594 0.66 0.767608
Target:  5'- gGCACuGCUcCGgCGCGGGccCGCC-GCg -3'
miRNA:   3'- gCGUGcUGA-GCgGCGCCCa-GUGGaCG- -5'
23584 3' -60 NC_005261.1 + 109632 0.66 0.767608
Target:  5'- cCGC-CaGCUCGgCGCGGGcggccCGCCgGCg -3'
miRNA:   3'- -GCGuGcUGAGCgGCGCCCa----GUGGaCG- -5'
23584 3' -60 NC_005261.1 + 50617 0.66 0.767608
Target:  5'- uCGCGCccaaCGUCGCGguGGUCGCCgGCa -3'
miRNA:   3'- -GCGUGcugaGCGGCGC--CCAGUGGaCG- -5'
23584 3' -60 NC_005261.1 + 60873 0.66 0.767608
Target:  5'- aCGCGCGGCcuggugcacugCGCUcaugGCGGGgggcggCGCCgGCg -3'
miRNA:   3'- -GCGUGCUGa----------GCGG----CGCCCa-----GUGGaCG- -5'
23584 3' -60 NC_005261.1 + 28221 0.66 0.767608
Target:  5'- aGgACGGCggCGCCgGCGGG-CguguccacgacgACCUGCc -3'
miRNA:   3'- gCgUGCUGa-GCGG-CGCCCaG------------UGGACG- -5'
23584 3' -60 NC_005261.1 + 22746 0.66 0.767608
Target:  5'- gGCGCG-C-CGCCGCGGccgaGCCcGCg -3'
miRNA:   3'- gCGUGCuGaGCGGCGCCcag-UGGaCG- -5'
23584 3' -60 NC_005261.1 + 80096 0.66 0.767608
Target:  5'- gGCGCG-CgCGCCGCGG--UACCgGCu -3'
miRNA:   3'- gCGUGCuGaGCGGCGCCcaGUGGaCG- -5'
23584 3' -60 NC_005261.1 + 80130 0.66 0.767608
Target:  5'- uCGCGCGGCUgGUgccgcccgaggaCGCGGG-C-CCUGg -3'
miRNA:   3'- -GCGUGCUGAgCG------------GCGCCCaGuGGACg -5'
23584 3' -60 NC_005261.1 + 46362 0.66 0.767608
Target:  5'- aGCGCGACggaCGCCGa-GGU-GCCgGCg -3'
miRNA:   3'- gCGUGCUGa--GCGGCgcCCAgUGGaCG- -5'
23584 3' -60 NC_005261.1 + 76159 0.66 0.767608
Target:  5'- gCGCACGACgccguggCGCUgcaguacgaGCGGG--GCCUGg -3'
miRNA:   3'- -GCGUGCUGa------GCGG---------CGCCCagUGGACg -5'
23584 3' -60 NC_005261.1 + 98901 0.66 0.767608
Target:  5'- aCGCgcgugaacaGCGGgUCGgCG-GGGUCGgCUGCg -3'
miRNA:   3'- -GCG---------UGCUgAGCgGCgCCCAGUgGACG- -5'
23584 3' -60 NC_005261.1 + 32254 0.66 0.767608
Target:  5'- gCGgGCGGCgucgaCGCCGCgcuGGG-CGCCgagGCc -3'
miRNA:   3'- -GCgUGCUGa----GCGGCG---CCCaGUGGa--CG- -5'
23584 3' -60 NC_005261.1 + 54863 0.66 0.767608
Target:  5'- uCGcCGCG-CUCGCCGaCGuGGaCGCCUucuGCg -3'
miRNA:   3'- -GC-GUGCuGAGCGGC-GC-CCaGUGGA---CG- -5'
23584 3' -60 NC_005261.1 + 104832 0.66 0.767608
Target:  5'- uCGCGgGGCcgCGCCacgcggaccgcGCGGGUCACgcacGCg -3'
miRNA:   3'- -GCGUgCUGa-GCGG-----------CGCCCAGUGga--CG- -5'
23584 3' -60 NC_005261.1 + 126466 0.66 0.767608
Target:  5'- aGCGCG-CUCGCCucGCGGuagUACC-GCg -3'
miRNA:   3'- gCGUGCuGAGCGG--CGCCca-GUGGaCG- -5'
23584 3' -60 NC_005261.1 + 35249 0.66 0.767608
Target:  5'- cCGC-CGugUCGCgCGCGGcGgcggaGCCcGCg -3'
miRNA:   3'- -GCGuGCugAGCG-GCGCC-Cag---UGGaCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.