miRNA display CGI


Results 1 - 20 of 338 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23588 3' -60.8 NC_005261.1 + 73531 0.65 0.7115
Target:  5'- cCGUgcgCGGCGGCGgccccgggacgcGCCC-GguGCCg -3'
miRNA:   3'- -GCAga-GCCGCCGCau----------CGGGaCguCGG- -5'
23588 3' -60.8 NC_005261.1 + 92168 0.66 0.706643
Target:  5'- gCG-CUCGGUGGagccgccgGGCCCgacgccgccgcuggcGCAGCCg -3'
miRNA:   3'- -GCaGAGCCGCCgca-----UCGGGa--------------CGUCGG- -5'
23588 3' -60.8 NC_005261.1 + 101278 0.66 0.70567
Target:  5'- gCG-C-CGcGCGGCG-GGCCUUGC-GCCa -3'
miRNA:   3'- -GCaGaGC-CGCCGCaUCGGGACGuCGG- -5'
23588 3' -60.8 NC_005261.1 + 35550 0.66 0.70567
Target:  5'- aCGg--UGGCGGCGgcGgCa-GCAGCCg -3'
miRNA:   3'- -GCagaGCCGCCGCauCgGgaCGUCGG- -5'
23588 3' -60.8 NC_005261.1 + 94809 0.66 0.70567
Target:  5'- aGUCcccgcCGGCGGCGgaggccGCCCccgGC-GCCu -3'
miRNA:   3'- gCAGa----GCCGCCGCau----CGGGa--CGuCGG- -5'
23588 3' -60.8 NC_005261.1 + 20248 0.66 0.70567
Target:  5'- cCGUCa-GGcCGGUGUGcgcGCCCaugGCAGCg -3'
miRNA:   3'- -GCAGagCC-GCCGCAU---CGGGa--CGUCGg -5'
23588 3' -60.8 NC_005261.1 + 18336 0.66 0.70567
Target:  5'- gCGUCgCGGCgccaGGUGUAcacGCCCU-CGGCUg -3'
miRNA:   3'- -GCAGaGCCG----CCGCAU---CGGGAcGUCGG- -5'
23588 3' -60.8 NC_005261.1 + 103925 0.66 0.70567
Target:  5'- gGUCggGcGCGGCGUcuGCCagacgCUGCAGCg -3'
miRNA:   3'- gCAGagC-CGCCGCAu-CGG-----GACGUCGg -5'
23588 3' -60.8 NC_005261.1 + 48328 0.66 0.70567
Target:  5'- cCGggCUCGggggcgcgcGCGGCGaGGCCgaGgAGCCg -3'
miRNA:   3'- -GCa-GAGC---------CGCCGCaUCGGgaCgUCGG- -5'
23588 3' -60.8 NC_005261.1 + 5067 0.66 0.70567
Target:  5'- gGUUgUCGGCGGCGacGCCgacgGCGGCg -3'
miRNA:   3'- gCAG-AGCCGCCGCauCGGga--CGUCGg -5'
23588 3' -60.8 NC_005261.1 + 33532 0.66 0.70567
Target:  5'- cCGUCcagccgcucuUCGG-GGCgGUGGCCCagGCGcuGCCg -3'
miRNA:   3'- -GCAG----------AGCCgCCG-CAUCGGGa-CGU--CGG- -5'
23588 3' -60.8 NC_005261.1 + 7186 0.66 0.70567
Target:  5'- gGUCguaggUGGCGGCGUcGCCg-GCgcgcucGGCCu -3'
miRNA:   3'- gCAGa----GCCGCCGCAuCGGgaCG------UCGG- -5'
23588 3' -60.8 NC_005261.1 + 77378 0.66 0.70567
Target:  5'- gCGUCUC--CGGCGcaccCCCUGCcGGCCg -3'
miRNA:   3'- -GCAGAGccGCCGCauc-GGGACG-UCGG- -5'
23588 3' -60.8 NC_005261.1 + 136900 0.66 0.70567
Target:  5'- uGUaCUgGcGUGGUGUGGgCCgcGCGGCCg -3'
miRNA:   3'- gCA-GAgC-CGCCGCAUCgGGa-CGUCGG- -5'
23588 3' -60.8 NC_005261.1 + 30825 0.66 0.70567
Target:  5'- -cUCUCGGCccuGGCGgccgGGCUCUG--GCCg -3'
miRNA:   3'- gcAGAGCCG---CCGCa---UCGGGACguCGG- -5'
23588 3' -60.8 NC_005261.1 + 123686 0.66 0.70567
Target:  5'- aCGUCcCGGCGcucaGCGUGGgCCgcguacuCGGCCa -3'
miRNA:   3'- -GCAGaGCCGC----CGCAUCgGGac-----GUCGG- -5'
23588 3' -60.8 NC_005261.1 + 109121 0.66 0.704696
Target:  5'- aGgg-CGGCGGUGUcgugcgcGGCCCcagGCAGgCg -3'
miRNA:   3'- gCagaGCCGCCGCA-------UCGGGa--CGUCgG- -5'
23588 3' -60.8 NC_005261.1 + 57506 0.66 0.702747
Target:  5'- aCGUCcCGGCGGCG-GGCCUucUuccacaggcacggcGCGGCg -3'
miRNA:   3'- -GCAGaGCCGCCGCaUCGGG--A--------------CGUCGg -5'
23588 3' -60.8 NC_005261.1 + 80235 0.66 0.695907
Target:  5'- aCGUCcuggcgcuuuUUGGCGGCGcGGCCgC-GCGcGCCu -3'
miRNA:   3'- -GCAG----------AGCCGCCGCaUCGG-GaCGU-CGG- -5'
23588 3' -60.8 NC_005261.1 + 99486 0.66 0.695907
Target:  5'- gGUC-CGGCucuGGCGcgggcccgGGCUCUGCGGgCg -3'
miRNA:   3'- gCAGaGCCG---CCGCa-------UCGGGACGUCgG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.