miRNA display CGI


Results 1 - 20 of 333 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23641 5' -60.6 NC_005261.1 + 71378 0.66 0.72154
Target:  5'- -----cCCAGCCGC-GCCGCgacCCGGu -3'
miRNA:   3'- gaagaaGGUCGGCGuCGGCGgc-GGCC- -5'
23641 5' -60.6 NC_005261.1 + 127070 0.66 0.72154
Target:  5'- ----gUCCAugguGCCGCcGCCgcGCCGCCGc -3'
miRNA:   3'- gaagaAGGU----CGGCGuCGG--CGGCGGCc -5'
23641 5' -60.6 NC_005261.1 + 50330 0.66 0.72154
Target:  5'- --cUUUCCAcCUGCaccAGCaGCCGCCGGu -3'
miRNA:   3'- gaaGAAGGUcGGCG---UCGgCGGCGGCC- -5'
23641 5' -60.6 NC_005261.1 + 72707 0.66 0.72154
Target:  5'- -gUCcgCCAGCguCGCGcCCGCCGCCc- -3'
miRNA:   3'- gaAGaaGGUCG--GCGUcGGCGGCGGcc -5'
23641 5' -60.6 NC_005261.1 + 108335 0.66 0.72154
Target:  5'- ----cUCCGcgacCCGCgccagGGCCGCCGCCGu -3'
miRNA:   3'- gaagaAGGUc---GGCG-----UCGGCGGCGGCc -5'
23641 5' -60.6 NC_005261.1 + 68990 0.66 0.72154
Target:  5'- -cUUUUCgGGCCGCgcGGgCGCCGCgGc -3'
miRNA:   3'- gaAGAAGgUCGGCG--UCgGCGGCGgCc -5'
23641 5' -60.6 NC_005261.1 + 82995 0.66 0.72154
Target:  5'- ------gCGGCCGCcucgcgcaccgAGCCGCCgucGCCGGc -3'
miRNA:   3'- gaagaagGUCGGCG-----------UCGGCGG---CGGCC- -5'
23641 5' -60.6 NC_005261.1 + 118126 0.66 0.72154
Target:  5'- -----gCCGGCuCGC-GCCGCUcgGCCGGc -3'
miRNA:   3'- gaagaaGGUCG-GCGuCGGCGG--CGGCC- -5'
23641 5' -60.6 NC_005261.1 + 115425 0.66 0.720576
Target:  5'- -----gCCggGGCCGCGGCCcgagcucgcgcucGCgGCCGGa -3'
miRNA:   3'- gaagaaGG--UCGGCGUCGG-------------CGgCGGCC- -5'
23641 5' -60.6 NC_005261.1 + 1307 0.66 0.720576
Target:  5'- -gUCg-CCGGCgGCGGCacgcgcuccgggaCGCCGCCGc -3'
miRNA:   3'- gaAGaaGGUCGgCGUCG-------------GCGGCGGCc -5'
23641 5' -60.6 NC_005261.1 + 101499 0.66 0.720576
Target:  5'- gUUCUUgagguuggCCAGCCcggcgcccucgucGCGGUCGCgCGCCGc -3'
miRNA:   3'- gAAGAA--------GGUCGG-------------CGUCGGCG-GCGGCc -5'
23641 5' -60.6 NC_005261.1 + 106672 0.66 0.720576
Target:  5'- -gUCgUCCAGCgCGCgcccgagGGCCGC-GCCGa -3'
miRNA:   3'- gaAGaAGGUCG-GCG-------UCGGCGgCGGCc -5'
23641 5' -60.6 NC_005261.1 + 127468 0.66 0.719611
Target:  5'- aCUUCggggggucagagUCCcagacGCUgGCGGCUGCCuGCCGGg -3'
miRNA:   3'- -GAAGa-----------AGGu----CGG-CGUCGGCGG-CGGCC- -5'
23641 5' -60.6 NC_005261.1 + 67334 0.66 0.719611
Target:  5'- -----cUCAGCCGCaggaacagcgccgGGCCcgcgaagGCCGCCGGc -3'
miRNA:   3'- gaagaaGGUCGGCG-------------UCGG-------CGGCGGCC- -5'
23641 5' -60.6 NC_005261.1 + 30341 0.66 0.715743
Target:  5'- --gCUggCGGCCGCgcucgcggcccugaaGGCCgGCgCGCCGGg -3'
miRNA:   3'- gaaGAagGUCGGCG---------------UCGG-CG-GCGGCC- -5'
23641 5' -60.6 NC_005261.1 + 31106 0.66 0.711865
Target:  5'- -----cCCGGCgGCc-CCGCCGCCGa -3'
miRNA:   3'- gaagaaGGUCGgCGucGGCGGCGGCc -5'
23641 5' -60.6 NC_005261.1 + 95016 0.66 0.711865
Target:  5'- -----gCgGGCUauaaAGCCGCCGCCGGc -3'
miRNA:   3'- gaagaaGgUCGGcg--UCGGCGGCGGCC- -5'
23641 5' -60.6 NC_005261.1 + 28870 0.66 0.711865
Target:  5'- --cCUUgaGGCUGCGGCgcggaCGCCGCCGc -3'
miRNA:   3'- gaaGAAggUCGGCGUCG-----GCGGCGGCc -5'
23641 5' -60.6 NC_005261.1 + 86976 0.66 0.711865
Target:  5'- ----gUCCGGCgGCAGCaCGgCGCCc- -3'
miRNA:   3'- gaagaAGGUCGgCGUCG-GCgGCGGcc -5'
23641 5' -60.6 NC_005261.1 + 97856 0.66 0.711865
Target:  5'- -----gCC-GCCGCGGCagCGCgGCCGGc -3'
miRNA:   3'- gaagaaGGuCGGCGUCG--GCGgCGGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.