miRNA display CGI


Results 1 - 20 of 474 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23659 3' -58.3 NC_005261.1 + 30316 0.66 0.841287
Target:  5'- gCCCGCcgGCGGAagugcCGGCGcGGC-UGGCg -3'
miRNA:   3'- -GGGUG--CGUCUggu--GCUGC-CCGuACCG- -5'
23659 3' -58.3 NC_005261.1 + 134254 0.66 0.841287
Target:  5'- cCCUGCGCGG-CCGCGuacccgauguACcugaagaucuGGGCGUGGg -3'
miRNA:   3'- -GGGUGCGUCuGGUGC----------UG----------CCCGUACCg -5'
23659 3' -58.3 NC_005261.1 + 1432 0.66 0.841287
Target:  5'- gCCCGCcucCAGcACCAgCGGCGGcGCcucGGCg -3'
miRNA:   3'- -GGGUGc--GUC-UGGU-GCUGCC-CGua-CCG- -5'
23659 3' -58.3 NC_005261.1 + 69653 0.66 0.841287
Target:  5'- gCCCuCGUcaACCgGCGGCuGGGgGUGGCc -3'
miRNA:   3'- -GGGuGCGucUGG-UGCUG-CCCgUACCG- -5'
23659 3' -58.3 NC_005261.1 + 21209 0.66 0.841287
Target:  5'- aCgCugGCcccGGCCGCGACGgcgggcccgucGGC-UGGCg -3'
miRNA:   3'- -GgGugCGu--CUGGUGCUGC-----------CCGuACCG- -5'
23659 3' -58.3 NC_005261.1 + 30933 0.66 0.841287
Target:  5'- gCCgGCGCAGcCCcucgGgGGCGGGCcucgaGGCc -3'
miRNA:   3'- -GGgUGCGUCuGG----UgCUGCCCGua---CCG- -5'
23659 3' -58.3 NC_005261.1 + 120355 0.66 0.841287
Target:  5'- cCCUGCGCuggacGGugCGCGACGGcGCc--GCg -3'
miRNA:   3'- -GGGUGCG-----UCugGUGCUGCC-CGuacCG- -5'
23659 3' -58.3 NC_005261.1 + 123401 0.66 0.841287
Target:  5'- aCCCGcCGCuugccGGCCAgGgGCGGGCucgccacgGGCc -3'
miRNA:   3'- -GGGU-GCGu----CUGGUgC-UGCCCGua------CCG- -5'
23659 3' -58.3 NC_005261.1 + 52968 0.66 0.841287
Target:  5'- gCCGCGcCGGugCGgcgcCGGCaGGCGggGGCg -3'
miRNA:   3'- gGGUGC-GUCugGU----GCUGcCCGUa-CCG- -5'
23659 3' -58.3 NC_005261.1 + 23154 0.66 0.841287
Target:  5'- cCCCAaagaGUGGGCC-CGGCaGGCGcgccgggGGCg -3'
miRNA:   3'- -GGGUg---CGUCUGGuGCUGcCCGUa------CCG- -5'
23659 3' -58.3 NC_005261.1 + 91223 0.66 0.841287
Target:  5'- gCCCACGCcaAGAUCGcCGACccGGCGcUGGa -3'
miRNA:   3'- -GGGUGCG--UCUGGU-GCUGc-CCGU-ACCg -5'
23659 3' -58.3 NC_005261.1 + 72527 0.66 0.841287
Target:  5'- uCCUugGCGGcUCGCuGCGcGGCAggggacgGGCg -3'
miRNA:   3'- -GGGugCGUCuGGUGcUGC-CCGUa------CCG- -5'
23659 3' -58.3 NC_005261.1 + 35925 0.66 0.841287
Target:  5'- cCCCGCGCcgcAGcCCA--GCGGGCGcccaGGCc -3'
miRNA:   3'- -GGGUGCG---UCuGGUgcUGCCCGUa---CCG- -5'
23659 3' -58.3 NC_005261.1 + 23734 0.66 0.84049
Target:  5'- gCCGCGCcGAggcgcguCCGgGAgGGGCG-GGCu -3'
miRNA:   3'- gGGUGCGuCU-------GGUgCUgCCCGUaCCG- -5'
23659 3' -58.3 NC_005261.1 + 43448 0.66 0.833237
Target:  5'- cUCgGCGCcuGGACguCGcCGGGCGggugcUGGCg -3'
miRNA:   3'- -GGgUGCG--UCUGguGCuGCCCGU-----ACCG- -5'
23659 3' -58.3 NC_005261.1 + 16407 0.66 0.833237
Target:  5'- gCCGgGCggugcgggagAGGCCcccucgACGGCGGGCGgcGGCu -3'
miRNA:   3'- gGGUgCG----------UCUGG------UGCUGCCCGUa-CCG- -5'
23659 3' -58.3 NC_005261.1 + 118823 0.66 0.833237
Target:  5'- gCCCuggGCGCGGcacuGCCGCucuGCGGcGCGgagGGCg -3'
miRNA:   3'- -GGG---UGCGUC----UGGUGc--UGCC-CGUa--CCG- -5'
23659 3' -58.3 NC_005261.1 + 51736 0.66 0.833237
Target:  5'- -nCACGCAGGCCcc--CGGGCugccgcUGGCc -3'
miRNA:   3'- ggGUGCGUCUGGugcuGCCCGu-----ACCG- -5'
23659 3' -58.3 NC_005261.1 + 110674 0.66 0.833237
Target:  5'- -aCGCGCAGcGCCugGAgcacgaGGGCuuccgcgcccacGUGGCc -3'
miRNA:   3'- ggGUGCGUC-UGGugCUg-----CCCG------------UACCG- -5'
23659 3' -58.3 NC_005261.1 + 63546 0.66 0.833237
Target:  5'- gCCCGCGCGccguGcCCGCuGGCGcGGCc-GGCa -3'
miRNA:   3'- -GGGUGCGU----CuGGUG-CUGC-CCGuaCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.