miRNA display CGI


Results 1 - 20 of 378 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23668 5' -59.2 NC_005261.1 + 133173 0.66 0.777781
Target:  5'- -cGCCGCCgacaaccgcgGCGCcGUCgaggagUUCAUCGCCg -3'
miRNA:   3'- guCGGCGG----------CGCGaUAGg-----AGGUAGCGG- -5'
23668 5' -59.2 NC_005261.1 + 58489 0.66 0.777781
Target:  5'- aGGCCGgCGCGCggccgCUUUUggCGCCc -3'
miRNA:   3'- gUCGGCgGCGCGaua--GGAGGuaGCGG- -5'
23668 5' -59.2 NC_005261.1 + 116020 0.66 0.777781
Target:  5'- gAGCCGCCgacgGCGCgcaugGUCUgcgCCAcgaUgGCCu -3'
miRNA:   3'- gUCGGCGG----CGCGa----UAGGa--GGU---AgCGG- -5'
23668 5' -59.2 NC_005261.1 + 4218 0.66 0.777781
Target:  5'- -cGUCGCgGCGCgcguacaccagGUCCaCCAgCGCCg -3'
miRNA:   3'- guCGGCGgCGCGa----------UAGGaGGUaGCGG- -5'
23668 5' -59.2 NC_005261.1 + 66444 0.66 0.777781
Target:  5'- cCAGCgCGgCGCGCg--CCgCCGguccCGCCa -3'
miRNA:   3'- -GUCG-GCgGCGCGauaGGaGGUa---GCGG- -5'
23668 5' -59.2 NC_005261.1 + 12511 0.66 0.777781
Target:  5'- cCGGgCGaCCGCGCggggCC-CCG-CGCCg -3'
miRNA:   3'- -GUCgGC-GGCGCGaua-GGaGGUaGCGG- -5'
23668 5' -59.2 NC_005261.1 + 12259 0.66 0.777781
Target:  5'- -cGCCGUCuCGCUGUCgCUC--UCGCUg -3'
miRNA:   3'- guCGGCGGcGCGAUAG-GAGguAGCGG- -5'
23668 5' -59.2 NC_005261.1 + 54734 0.66 0.777781
Target:  5'- gCGGCCGaguccgacgaaCGCGCg---CUCgAUCGCCg -3'
miRNA:   3'- -GUCGGCg----------GCGCGauagGAGgUAGCGG- -5'
23668 5' -59.2 NC_005261.1 + 127984 0.66 0.777781
Target:  5'- gUAGCCGuaGaUGCUGUUUUCCcgCGUCc -3'
miRNA:   3'- -GUCGGCggC-GCGAUAGGAGGuaGCGG- -5'
23668 5' -59.2 NC_005261.1 + 116349 0.66 0.777781
Target:  5'- -cGCC-CCGUGCggguUCgUCCGUgcCGCCg -3'
miRNA:   3'- guCGGcGGCGCGau--AGgAGGUA--GCGG- -5'
23668 5' -59.2 NC_005261.1 + 75650 0.66 0.772264
Target:  5'- gCGGCCGgCGCGUUccugGcgcgcgcgcagaaccUCUUCC-UCGCCg -3'
miRNA:   3'- -GUCGGCgGCGCGA----U---------------AGGAGGuAGCGG- -5'
23668 5' -59.2 NC_005261.1 + 116167 0.66 0.768561
Target:  5'- gCGGUCGCgGcCGC-GUCC-CCGaCGCCg -3'
miRNA:   3'- -GUCGGCGgC-GCGaUAGGaGGUaGCGG- -5'
23668 5' -59.2 NC_005261.1 + 82395 0.66 0.768561
Target:  5'- cCAGcCCGCgGgGCcgucGUCC-CCcgCGCCg -3'
miRNA:   3'- -GUC-GGCGgCgCGa---UAGGaGGuaGCGG- -5'
23668 5' -59.2 NC_005261.1 + 57048 0.66 0.768561
Target:  5'- gCAGCaCGaUCGUGUUcgCCUCCA--GCCa -3'
miRNA:   3'- -GUCG-GC-GGCGCGAuaGGAGGUagCGG- -5'
23668 5' -59.2 NC_005261.1 + 86867 0.66 0.768561
Target:  5'- -cGCCGCCGgGCgcggcggCCUuggCCG-CGCCc -3'
miRNA:   3'- guCGGCGGCgCGaua----GGA---GGUaGCGG- -5'
23668 5' -59.2 NC_005261.1 + 27831 0.66 0.768561
Target:  5'- cUAGCCaGCCGagccaGCcagccUCuCUCCGUCGUCg -3'
miRNA:   3'- -GUCGG-CGGCg----CGau---AG-GAGGUAGCGG- -5'
23668 5' -59.2 NC_005261.1 + 108493 0.66 0.768561
Target:  5'- -cGCgCGCCGCgacGCUAcCCgcggCCA-CGCCg -3'
miRNA:   3'- guCG-GCGGCG---CGAUaGGa---GGUaGCGG- -5'
23668 5' -59.2 NC_005261.1 + 71874 0.66 0.766703
Target:  5'- gCGGuCCGcCCGCGCgggcacgaaaaaGUgCUCCG-CGCCg -3'
miRNA:   3'- -GUC-GGC-GGCGCGa-----------UAgGAGGUaGCGG- -5'
23668 5' -59.2 NC_005261.1 + 103883 0.66 0.76484
Target:  5'- -cGCCGCCGgGCggcgcgccaagCCgggCCAcccgCGCCg -3'
miRNA:   3'- guCGGCGGCgCGaua--------GGa--GGUa---GCGG- -5'
23668 5' -59.2 NC_005261.1 + 96965 0.66 0.760163
Target:  5'- gCAGCCGCCGgGCgcgauucacgcggCCUCgG-CGCg -3'
miRNA:   3'- -GUCGGCGGCgCGaua----------GGAGgUaGCGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.