miRNA display CGI


Results 1 - 20 of 525 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23688 3' -61.7 NC_005261.1 + 5468 0.65 0.653455
Target:  5'- -cCGAGCAgcccccgcuaucgcGCGCGCCggggggUAGCugGGGCc -3'
miRNA:   3'- ccGCUCGU--------------CGCGCGG------GUCGugCCUGu -5'
23688 3' -61.7 NC_005261.1 + 15178 0.65 0.653455
Target:  5'- cGGCG-GCGGCGCccgcgggaaacgccGCCaucGCGCGGuCGu -3'
miRNA:   3'- -CCGCuCGUCGCG--------------CGGgu-CGUGCCuGU- -5'
23688 3' -61.7 NC_005261.1 + 80076 0.66 0.650475
Target:  5'- gGGCGugggggacgcggaccGGCGcGCGCGCCgCGGUACcggcuuGGGCGc -3'
miRNA:   3'- -CCGC---------------UCGU-CGCGCGG-GUCGUG------CCUGU- -5'
23688 3' -61.7 NC_005261.1 + 104827 0.66 0.6465
Target:  5'- cGGCGucGCGGgGcCGCgCCA-CGCGGACc -3'
miRNA:   3'- -CCGCu-CGUCgC-GCG-GGUcGUGCCUGu -5'
23688 3' -61.7 NC_005261.1 + 113329 0.66 0.6465
Target:  5'- cGCGAGaAG-GuCGCgCGGCACGGGCu -3'
miRNA:   3'- cCGCUCgUCgC-GCGgGUCGUGCCUGu -5'
23688 3' -61.7 NC_005261.1 + 15698 0.66 0.6465
Target:  5'- cGCGAGCGuUGCG-UCGGCugGGugGa -3'
miRNA:   3'- cCGCUCGUcGCGCgGGUCGugCCugU- -5'
23688 3' -61.7 NC_005261.1 + 120328 0.66 0.6465
Target:  5'- aGGCGcGCugcguccccgAGCGCGucuCCCuGCGCuGGACGg -3'
miRNA:   3'- -CCGCuCG----------UCGCGC---GGGuCGUG-CCUGU- -5'
23688 3' -61.7 NC_005261.1 + 90060 0.66 0.6465
Target:  5'- aGCcAGCGGCGC-CCCgcgGGCGCcgaGGGCAg -3'
miRNA:   3'- cCGcUCGUCGCGcGGG---UCGUG---CCUGU- -5'
23688 3' -61.7 NC_005261.1 + 13146 0.66 0.6465
Target:  5'- cGGUGA-CGGCGCGCaCCAG-GCGGuCc -3'
miRNA:   3'- -CCGCUcGUCGCGCG-GGUCgUGCCuGu -5'
23688 3' -61.7 NC_005261.1 + 23185 0.66 0.6465
Target:  5'- gGGCGAcaGCgAGCGCGCCgCGGgGCccGCAg -3'
miRNA:   3'- -CCGCU--CG-UCGCGCGG-GUCgUGccUGU- -5'
23688 3' -61.7 NC_005261.1 + 101722 0.66 0.6465
Target:  5'- uGCGc-CAGCGCGCCC-GCGaucaGGGCc -3'
miRNA:   3'- cCGCucGUCGCGCGGGuCGUg---CCUGu -5'
23688 3' -61.7 NC_005261.1 + 70974 0.66 0.636555
Target:  5'- cGGCGaAGaagAGCGCGUggcGCGCGGGCGg -3'
miRNA:   3'- -CCGC-UCg--UCGCGCGgguCGUGCCUGU- -5'
23688 3' -61.7 NC_005261.1 + 74892 0.66 0.636555
Target:  5'- cGGCgGAGuCGGCG-GCCCGcgcuggccGCGCGGGgGa -3'
miRNA:   3'- -CCG-CUC-GUCGCgCGGGU--------CGUGCCUgU- -5'
23688 3' -61.7 NC_005261.1 + 137011 0.66 0.636555
Target:  5'- cGGCcgGAG-AGCGCGgCCAGCAgaacggcguCGGugGa -3'
miRNA:   3'- -CCG--CUCgUCGCGCgGGUCGU---------GCCugU- -5'
23688 3' -61.7 NC_005261.1 + 46291 0.66 0.636555
Target:  5'- uGGcCGGGCaacGGCGCGCCgCAGUagccccGCGaGGCu -3'
miRNA:   3'- -CC-GCUCG---UCGCGCGG-GUCG------UGC-CUGu -5'
23688 3' -61.7 NC_005261.1 + 65805 0.66 0.636555
Target:  5'- cGCGGGuCGGgGUGCCCgGGCgGCGGcGCGa -3'
miRNA:   3'- cCGCUC-GUCgCGCGGG-UCG-UGCC-UGU- -5'
23688 3' -61.7 NC_005261.1 + 64774 0.66 0.636555
Target:  5'- aGCucGCGGCGCGCCaCGacGUGCGGcGCAg -3'
miRNA:   3'- cCGcuCGUCGCGCGG-GU--CGUGCC-UGU- -5'
23688 3' -61.7 NC_005261.1 + 50198 0.66 0.636555
Target:  5'- cGGUGcAGCAGCGCGucgaCCCGGUGCaaGCGc -3'
miRNA:   3'- -CCGC-UCGUCGCGC----GGGUCGUGccUGU- -5'
23688 3' -61.7 NC_005261.1 + 69352 0.66 0.636555
Target:  5'- cGGCGAcgacGCGGcCGCGCgC-GCGCuGGACc -3'
miRNA:   3'- -CCGCU----CGUC-GCGCGgGuCGUG-CCUGu -5'
23688 3' -61.7 NC_005261.1 + 79979 0.66 0.636555
Target:  5'- aGGUGAacuGCAGCGCcgcgaacucgGCCgAGCucACGGugGu -3'
miRNA:   3'- -CCGCU---CGUCGCG----------CGGgUCG--UGCCugU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.