miRNA display CGI


Results 1 - 20 of 253 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23691 5' -59.8 NC_005261.1 + 102450 0.66 0.75213
Target:  5'- cGCCGCCCGGCcucGGCgCgcagGCGCCggaccuccUCGg- -3'
miRNA:   3'- -CGGCGGGCCG---CUG-G----UGCGGaa------AGCau -5'
23691 5' -59.8 NC_005261.1 + 29802 0.66 0.75213
Target:  5'- gGCCgGCgCCGGCGGcgcgggcgcCCGCGCCgcgcUCGc- -3'
miRNA:   3'- -CGG-CG-GGCCGCU---------GGUGCGGaa--AGCau -5'
23691 5' -59.8 NC_005261.1 + 95784 0.66 0.75213
Target:  5'- cGCUGCgCCGGCGcgcugcuaGCCGgCGCCgg-CGg- -3'
miRNA:   3'- -CGGCG-GGCCGC--------UGGU-GCGGaaaGCau -5'
23691 5' -59.8 NC_005261.1 + 56713 0.66 0.75213
Target:  5'- cGCUGCUaaGgGACCACGCCgagCGc- -3'
miRNA:   3'- -CGGCGGgcCgCUGGUGCGGaaaGCau -5'
23691 5' -59.8 NC_005261.1 + 97159 0.66 0.75213
Target:  5'- cGCCgGCCCGGcCGGCUgggucgcggGCGCCggcCGg- -3'
miRNA:   3'- -CGG-CGGGCC-GCUGG---------UGCGGaaaGCau -5'
23691 5' -59.8 NC_005261.1 + 45628 0.66 0.75213
Target:  5'- cGCgGCgCGGCGGgcCCGCGCCggagcaGUGc -3'
miRNA:   3'- -CGgCGgGCCGCU--GGUGCGGaaag--CAU- -5'
23691 5' -59.8 NC_005261.1 + 98774 0.66 0.75213
Target:  5'- uGCCGCcgCCGGCcGCCG-GCCgcgCGUGc -3'
miRNA:   3'- -CGGCG--GGCCGcUGGUgCGGaaaGCAU- -5'
23691 5' -59.8 NC_005261.1 + 117003 0.66 0.75213
Target:  5'- aGCCGCCCGcgaGCGugCugACGCagguaaccuaCUUUCGg- -3'
miRNA:   3'- -CGGCGGGC---CGCugG--UGCG----------GAAAGCau -5'
23691 5' -59.8 NC_005261.1 + 42813 0.66 0.75213
Target:  5'- -aCGUCC-GCGGCCGCGCCggcCGg- -3'
miRNA:   3'- cgGCGGGcCGCUGGUGCGGaaaGCau -5'
23691 5' -59.8 NC_005261.1 + 106535 0.66 0.751187
Target:  5'- aCCGCCuccucggCGGCGGCCGCGuCCgggcCGg- -3'
miRNA:   3'- cGGCGG-------GCCGCUGGUGC-GGaaa-GCau -5'
23691 5' -59.8 NC_005261.1 + 71878 0.66 0.746456
Target:  5'- uCCGCCCGcGCGGgcacgaaaaagugcuCCGCGCCgc-CGg- -3'
miRNA:   3'- cGGCGGGC-CGCU---------------GGUGCGGaaaGCau -5'
23691 5' -59.8 NC_005261.1 + 56547 0.66 0.742654
Target:  5'- aGCCGgCUGGUGGgCACGuCCUUcUCGc- -3'
miRNA:   3'- -CGGCgGGCCGCUgGUGC-GGAA-AGCau -5'
23691 5' -59.8 NC_005261.1 + 1335 0.66 0.742654
Target:  5'- cGCCGCC--GCG-CCGCGCCUgcaccagCGUc -3'
miRNA:   3'- -CGGCGGgcCGCuGGUGCGGAaa-----GCAu -5'
23691 5' -59.8 NC_005261.1 + 115207 0.66 0.742654
Target:  5'- -gCGCCCGuGCGuCCGCGgCgcgaUCGUGu -3'
miRNA:   3'- cgGCGGGC-CGCuGGUGCgGaa--AGCAU- -5'
23691 5' -59.8 NC_005261.1 + 132601 0.66 0.742654
Target:  5'- cGCCcgGCCCGGCGAgC-CGCCa------ -3'
miRNA:   3'- -CGG--CGGGCCGCUgGuGCGGaaagcau -5'
23691 5' -59.8 NC_005261.1 + 116513 0.66 0.742654
Target:  5'- cGCCGCCgCGGCGGCgCGaggccCGCCgcUCc-- -3'
miRNA:   3'- -CGGCGG-GCCGCUG-GU-----GCGGaaAGcau -5'
23691 5' -59.8 NC_005261.1 + 1907 0.66 0.742654
Target:  5'- cGCCGCUcaggccagcgcgCGGCGcACUGCGCCg--CGg- -3'
miRNA:   3'- -CGGCGG------------GCCGC-UGGUGCGGaaaGCau -5'
23691 5' -59.8 NC_005261.1 + 118082 0.66 0.742654
Target:  5'- aGCCGCgcucgucugCUGGCGGCC-CGCCg--CGc- -3'
miRNA:   3'- -CGGCG---------GGCCGCUGGuGCGGaaaGCau -5'
23691 5' -59.8 NC_005261.1 + 131823 0.66 0.742654
Target:  5'- cGCCGCCgcuugacgCGGCG-CC-CGCCUgcugCGg- -3'
miRNA:   3'- -CGGCGG--------GCCGCuGGuGCGGAaa--GCau -5'
23691 5' -59.8 NC_005261.1 + 59370 0.66 0.742654
Target:  5'- uGUCGCCCGccaGCGcCCGCGCCacggCGc- -3'
miRNA:   3'- -CGGCGGGC---CGCuGGUGCGGaaa-GCau -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.