miRNA display CGI


Results 1 - 20 of 191 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23699 3' -57.7 NC_005261.1 + 30728 0.66 0.817196
Target:  5'- cGGGC-CGCcagGCC-CGAGCCCC-AGCc -3'
miRNA:   3'- aUUCGcGCGa--UGGaGCUCGGGGcUUG- -5'
23699 3' -57.7 NC_005261.1 + 29909 0.66 0.817196
Target:  5'- -cAGCGCGCgagcgGCUgcgCGAGCUggCGGACg -3'
miRNA:   3'- auUCGCGCGa----UGGa--GCUCGGg-GCUUG- -5'
23699 3' -57.7 NC_005261.1 + 15847 0.66 0.816324
Target:  5'- cGAGCGCGCUagaggacgaggucGCggcaauggCUCGAGUCgCCGAcGCg -3'
miRNA:   3'- aUUCGCGCGA-------------UG--------GAGCUCGG-GGCU-UG- -5'
23699 3' -57.7 NC_005261.1 + 118792 0.66 0.814577
Target:  5'- -cGGCGCGCUgauggcgcacguggGCgUCuGcGCCCUGGGCg -3'
miRNA:   3'- auUCGCGCGA--------------UGgAG-CuCGGGGCUUG- -5'
23699 3' -57.7 NC_005261.1 + 105140 0.66 0.808407
Target:  5'- -cGGCGCGCgcagguCCUCGcGGCUCgaGGGCg -3'
miRNA:   3'- auUCGCGCGau----GGAGC-UCGGGg-CUUG- -5'
23699 3' -57.7 NC_005261.1 + 76076 0.66 0.808407
Target:  5'- aGGGCGgGCUgcugcGCCUCGuGGCgCUgGAGCu -3'
miRNA:   3'- aUUCGCgCGA-----UGGAGC-UCG-GGgCUUG- -5'
23699 3' -57.7 NC_005261.1 + 48665 0.66 0.808407
Target:  5'- aGAGcCGCGCggcaacggcgACUaCGGGCCCgCGGGCc -3'
miRNA:   3'- aUUC-GCGCGa---------UGGaGCUCGGG-GCUUG- -5'
23699 3' -57.7 NC_005261.1 + 86873 0.66 0.808407
Target:  5'- cGGGCGCgGCgGCCUUGGccgcGCCCUGGuccGCg -3'
miRNA:   3'- aUUCGCG-CGaUGGAGCU----CGGGGCU---UG- -5'
23699 3' -57.7 NC_005261.1 + 74789 0.66 0.808407
Target:  5'- --cGCGCGCauccgGCCuaUCGAGgCCCGcguGGCg -3'
miRNA:   3'- auuCGCGCGa----UGG--AGCUCgGGGC---UUG- -5'
23699 3' -57.7 NC_005261.1 + 52667 0.66 0.808407
Target:  5'- --cGCGCGC-ACUUCGAgcggGCCCUGcuCg -3'
miRNA:   3'- auuCGCGCGaUGGAGCU----CGGGGCuuG- -5'
23699 3' -57.7 NC_005261.1 + 100567 0.66 0.808407
Target:  5'- -cAGCGUGCacaccgccGCCUCGucGCCCagGAGCg -3'
miRNA:   3'- auUCGCGCGa-------UGGAGCu-CGGGg-CUUG- -5'
23699 3' -57.7 NC_005261.1 + 34418 0.66 0.807519
Target:  5'- -uGGCGCGCgGCCcgCGccuGCCCCugcugccGAACg -3'
miRNA:   3'- auUCGCGCGaUGGa-GCu--CGGGG-------CUUG- -5'
23699 3' -57.7 NC_005261.1 + 39398 0.66 0.799456
Target:  5'- -uGGCG-GCgACC-CGAGCCCC-AGCg -3'
miRNA:   3'- auUCGCgCGaUGGaGCUCGGGGcUUG- -5'
23699 3' -57.7 NC_005261.1 + 96288 0.66 0.799456
Target:  5'- -uGGCGCgGCUucgGCCUCG-GCCgCGcGCa -3'
miRNA:   3'- auUCGCG-CGA---UGGAGCuCGGgGCuUG- -5'
23699 3' -57.7 NC_005261.1 + 133362 0.66 0.799456
Target:  5'- --cGCGCagggcuucgGCUGCCUgCGcgcGGCCCaCGGGCg -3'
miRNA:   3'- auuCGCG---------CGAUGGA-GC---UCGGG-GCUUG- -5'
23699 3' -57.7 NC_005261.1 + 85019 0.66 0.799456
Target:  5'- gGGGuCGCGCgGCCgcCGcGCCCCGGccACg -3'
miRNA:   3'- aUUC-GCGCGaUGGa-GCuCGGGGCU--UG- -5'
23699 3' -57.7 NC_005261.1 + 46995 0.66 0.799456
Target:  5'- -cAGCGCGCgccgcGCCgccgCGAugcggcgguccaGCCCCGcGACg -3'
miRNA:   3'- auUCGCGCGa----UGGa---GCU------------CGGGGC-UUG- -5'
23699 3' -57.7 NC_005261.1 + 21829 0.66 0.799456
Target:  5'- cGGGCGCGCgUGCgggCGGgcucGCCCCGcAGCu -3'
miRNA:   3'- aUUCGCGCG-AUGga-GCU----CGGGGC-UUG- -5'
23699 3' -57.7 NC_005261.1 + 53879 0.66 0.799456
Target:  5'- --cGCGCGCUGUCgagucgaagCGGGCCCgcuucgCGAGCg -3'
miRNA:   3'- auuCGCGCGAUGGa--------GCUCGGG------GCUUG- -5'
23699 3' -57.7 NC_005261.1 + 23742 0.66 0.799456
Target:  5'- gAGGCGCGU--CCgggaggggCGGgcuuGCCCCGGGCg -3'
miRNA:   3'- aUUCGCGCGauGGa-------GCU----CGGGGCUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.