miRNA display CGI


Results 1 - 20 of 290 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23739 5' -64.5 NC_005261.1 + 47064 0.66 0.495801
Target:  5'- cGGGCCGAGCGCgugguacgcguGCACGccgaaGGCGGg--- -3'
miRNA:   3'- -UCCGGCUCGCG-----------CGUGUc----CCGCCgcau -5'
23739 5' -64.5 NC_005261.1 + 85944 0.66 0.495801
Target:  5'- cGGCCaGGGCGC-CGCGGaaGCuGGCGUGg -3'
miRNA:   3'- uCCGG-CUCGCGcGUGUCc-CG-CCGCAU- -5'
23739 5' -64.5 NC_005261.1 + 52972 0.66 0.495801
Target:  5'- -cGCCG-GUGCgGCGCcggcaggcgGGGGCGGCGc- -3'
miRNA:   3'- ucCGGCuCGCG-CGUG---------UCCCGCCGCau -5'
23739 5' -64.5 NC_005261.1 + 18948 0.66 0.495801
Target:  5'- aAGGCgGGGUGCuccGCAgcuCAGuGGCGGUGg- -3'
miRNA:   3'- -UCCGgCUCGCG---CGU---GUC-CCGCCGCau -5'
23739 5' -64.5 NC_005261.1 + 83590 0.66 0.495801
Target:  5'- cGGCCGccagcAGCGCGuCGCucuccgccGCGGCGUGg -3'
miRNA:   3'- uCCGGC-----UCGCGC-GUGucc-----CGCCGCAU- -5'
23739 5' -64.5 NC_005261.1 + 74781 0.66 0.495801
Target:  5'- gAGGUCGAcGCGCGCAUccggccuaucgAGGcccgcGUGGCGg- -3'
miRNA:   3'- -UCCGGCU-CGCGCGUG-----------UCC-----CGCCGCau -5'
23739 5' -64.5 NC_005261.1 + 124457 0.66 0.495801
Target:  5'- gGGGCCGGGUGCcCucaGGGGCGcccaCGUAc -3'
miRNA:   3'- -UCCGGCUCGCGcGug-UCCCGCc---GCAU- -5'
23739 5' -64.5 NC_005261.1 + 77036 0.66 0.495801
Target:  5'- gAGGCC--GCGCGCGCGGcccuCGGCGa- -3'
miRNA:   3'- -UCCGGcuCGCGCGUGUCcc--GCCGCau -5'
23739 5' -64.5 NC_005261.1 + 1983 0.66 0.494876
Target:  5'- cGGCCGGGCcaucgGCGgccaguuCGCGGGGUccacGGCGUc -3'
miRNA:   3'- uCCGGCUCG-----CGC-------GUGUCCCG----CCGCAu -5'
23739 5' -64.5 NC_005261.1 + 46803 0.66 0.494876
Target:  5'- -cGUCGcGGCGCGCGCGGauggcgcgcgccaGGCGcGCGUGc -3'
miRNA:   3'- ucCGGC-UCGCGCGUGUC-------------CCGC-CGCAU- -5'
23739 5' -64.5 NC_005261.1 + 107010 0.66 0.494876
Target:  5'- -cGCCGAGCGCcacguGCccaaggaGCAGGGCGcgccacgcgccGCGUAc -3'
miRNA:   3'- ucCGGCUCGCG-----CG-------UGUCCCGC-----------CGCAU- -5'
23739 5' -64.5 NC_005261.1 + 99055 0.66 0.490263
Target:  5'- cGaGCUGcAGCuGCGUguccagcaugaugagGCAGGGCGGCGc- -3'
miRNA:   3'- uC-CGGC-UCG-CGCG---------------UGUCCCGCCGCau -5'
23739 5' -64.5 NC_005261.1 + 103682 0.66 0.490263
Target:  5'- gAGGCCGAGCGCccguuUAUAGcGGCcacgucacccagcacGGCGUc -3'
miRNA:   3'- -UCCGGCUCGCGc----GUGUC-CCG---------------CCGCAu -5'
23739 5' -64.5 NC_005261.1 + 6249 0.66 0.486587
Target:  5'- aGGGCCu-GCcCGCcccGCGGGGCGGCc-- -3'
miRNA:   3'- -UCCGGcuCGcGCG---UGUCCCGCCGcau -5'
23739 5' -64.5 NC_005261.1 + 85523 0.66 0.486587
Target:  5'- gAGGUCGccguccauGuCGCGCGC-GGGCGGCu-- -3'
miRNA:   3'- -UCCGGCu-------C-GCGCGUGuCCCGCCGcau -5'
23739 5' -64.5 NC_005261.1 + 101680 0.66 0.486587
Target:  5'- uAGGCCGAGCcgGCGaaGCGGGcGUGGuCGa- -3'
miRNA:   3'- -UCCGGCUCG--CGCg-UGUCC-CGCC-GCau -5'
23739 5' -64.5 NC_005261.1 + 98444 0.66 0.486587
Target:  5'- cGGGCCGguaggcGGCGCcCGCAaaauccgacGGGCGGcCGUc -3'
miRNA:   3'- -UCCGGC------UCGCGcGUGU---------CCCGCC-GCAu -5'
23739 5' -64.5 NC_005261.1 + 97249 0.66 0.486587
Target:  5'- cGGCUGGGuCGCGgGgucGGGUGGCGg- -3'
miRNA:   3'- uCCGGCUC-GCGCgUgu-CCCGCCGCau -5'
23739 5' -64.5 NC_005261.1 + 128101 0.66 0.486587
Target:  5'- cGGgCGAGCG-GCGCGGcGCGGgGUn -3'
miRNA:   3'- uCCgGCUCGCgCGUGUCcCGCCgCAu -5'
23739 5' -64.5 NC_005261.1 + 104787 0.66 0.486587
Target:  5'- cAGGCCGcgaucGCGUGCuccaGCGGGucccgcuccgcaGCGGCGUc -3'
miRNA:   3'- -UCCGGCu----CGCGCG----UGUCC------------CGCCGCAu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.