Results 1 - 20 of 305 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23740 | 3' | -62.2 | NC_005261.1 | + | 27310 | 0.66 | 0.637055 |
Target: 5'- cCGGGCcaacGCGCGCGgGUcaAGGggGCggaACGGGg -3' miRNA: 3'- -GCCCG----CGCGUGCgCG--UCCa-CG---UGCUC- -5' |
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23740 | 3' | -62.2 | NC_005261.1 | + | 106185 | 0.66 | 0.637055 |
Target: 5'- gGGGCGC-CGCGCGCGuGGcGC-CGu- -3' miRNA: 3'- gCCCGCGcGUGCGCGU-CCaCGuGCuc -5' |
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23740 | 3' | -62.2 | NC_005261.1 | + | 14962 | 0.66 | 0.637055 |
Target: 5'- gCGGGCGUGcCugGgGCGacUGCGCGGc -3' miRNA: 3'- -GCCCGCGC-GugCgCGUccACGUGCUc -5' |
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23740 | 3' | -62.2 | NC_005261.1 | + | 106560 | 0.66 | 0.637055 |
Target: 5'- cCGGGCcgGCGCGCGCcggcccCGGGgccgccGCGCGGc -3' miRNA: 3'- -GCCCG--CGCGUGCGc-----GUCCa-----CGUGCUc -5' |
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23740 | 3' | -62.2 | NC_005261.1 | + | 107036 | 0.66 | 0.637055 |
Target: 5'- aGGGCGCGcCACGCGCcGcGUaCACc-- -3' miRNA: 3'- gCCCGCGC-GUGCGCGuC-CAcGUGcuc -5' |
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23740 | 3' | -62.2 | NC_005261.1 | + | 66618 | 0.66 | 0.637055 |
Target: 5'- -uGGCGCGCGUGCGCAuG-GCcgACGAGa -3' miRNA: 3'- gcCCGCGCGUGCGCGUcCaCG--UGCUC- -5' |
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23740 | 3' | -62.2 | NC_005261.1 | + | 96113 | 0.66 | 0.627181 |
Target: 5'- uCGGGaCGuCGCugGCcauggucgaccuGCGGcGgcgGCACGAGa -3' miRNA: 3'- -GCCC-GC-GCGugCG------------CGUC-Ca--CGUGCUC- -5' |
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23740 | 3' | -62.2 | NC_005261.1 | + | 23843 | 0.66 | 0.627181 |
Target: 5'- aGGGUGgGCuCGCcgggGCAGGccgGCugGGGc -3' miRNA: 3'- gCCCGCgCGuGCG----CGUCCa--CGugCUC- -5' |
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23740 | 3' | -62.2 | NC_005261.1 | + | 114218 | 0.66 | 0.627181 |
Target: 5'- uCGaGGUgGUGCACuCGCGGGUGUACa-- -3' miRNA: 3'- -GC-CCG-CGCGUGcGCGUCCACGUGcuc -5' |
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23740 | 3' | -62.2 | NC_005261.1 | + | 23786 | 0.66 | 0.627181 |
Target: 5'- aGGGUGgGCuCGCcgggGCAGGccgGCugGGGc -3' miRNA: 3'- gCCCGCgCGuGCG----CGUCCa--CGugCUC- -5' |
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23740 | 3' | -62.2 | NC_005261.1 | + | 35149 | 0.66 | 0.627181 |
Target: 5'- cCGcGGCGCaaGCACGCGCAugcGGacccgaGCGCaGAGa -3' miRNA: 3'- -GC-CCGCG--CGUGCGCGU---CCa-----CGUG-CUC- -5' |
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23740 | 3' | -62.2 | NC_005261.1 | + | 110242 | 0.66 | 0.617311 |
Target: 5'- uGGGCgGCGCgGCGCcCGGGggGCuGCGGGc -3' miRNA: 3'- gCCCG-CGCG-UGCGcGUCCa-CG-UGCUC- -5' |
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23740 | 3' | -62.2 | NC_005261.1 | + | 108890 | 0.66 | 0.617311 |
Target: 5'- aCGGcCGCGCugcccgccgGCGaGCGGG-GCGCGGGg -3' miRNA: 3'- -GCCcGCGCG---------UGCgCGUCCaCGUGCUC- -5' |
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23740 | 3' | -62.2 | NC_005261.1 | + | 62813 | 0.66 | 0.617311 |
Target: 5'- uGGGCcauauCGC-CGCGCGGG-GCaccgGCGGGg -3' miRNA: 3'- gCCCGc----GCGuGCGCGUCCaCG----UGCUC- -5' |
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23740 | 3' | -62.2 | NC_005261.1 | + | 127767 | 0.66 | 0.617311 |
Target: 5'- gCGGGCGCGaagACGCcCGGcUGCuCGAGc -3' miRNA: 3'- -GCCCGCGCg--UGCGcGUCcACGuGCUC- -5' |
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23740 | 3' | -62.2 | NC_005261.1 | + | 38506 | 0.66 | 0.617311 |
Target: 5'- uGGaGCGUcguauaagGCGCGCGCuGGcUGCGCGc- -3' miRNA: 3'- gCC-CGCG--------CGUGCGCGuCC-ACGUGCuc -5' |
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23740 | 3' | -62.2 | NC_005261.1 | + | 64117 | 0.66 | 0.617311 |
Target: 5'- aCGGGCG-GCACGUGCc---GCGCGGc -3' miRNA: 3'- -GCCCGCgCGUGCGCGuccaCGUGCUc -5' |
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23740 | 3' | -62.2 | NC_005261.1 | + | 94876 | 0.66 | 0.617311 |
Target: 5'- cCGGGCGgGCggcccGCGUGCAGccacacgcgcGcGCugGAGg -3' miRNA: 3'- -GCCCGCgCG-----UGCGCGUC----------CaCGugCUC- -5' |
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23740 | 3' | -62.2 | NC_005261.1 | + | 65658 | 0.66 | 0.617311 |
Target: 5'- uGGcGCGCGCcgGCGCGCAGcGccgccaGCAcCGGGu -3' miRNA: 3'- gCC-CGCGCG--UGCGCGUC-Ca-----CGU-GCUC- -5' |
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23740 | 3' | -62.2 | NC_005261.1 | + | 88149 | 0.66 | 0.617311 |
Target: 5'- gCGGGgGCGCcccggcCGCGCAGccggGC-CGGGg -3' miRNA: 3'- -GCCCgCGCGu-----GCGCGUCca--CGuGCUC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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