miRNA display CGI


Results 1 - 20 of 305 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23740 3' -62.2 NC_005261.1 + 66618 0.66 0.637055
Target:  5'- -uGGCGCGCGUGCGCAuG-GCcgACGAGa -3'
miRNA:   3'- gcCCGCGCGUGCGCGUcCaCG--UGCUC- -5'
23740 3' -62.2 NC_005261.1 + 27310 0.66 0.637055
Target:  5'- cCGGGCcaacGCGCGCGgGUcaAGGggGCggaACGGGg -3'
miRNA:   3'- -GCCCG----CGCGUGCgCG--UCCa-CG---UGCUC- -5'
23740 3' -62.2 NC_005261.1 + 106185 0.66 0.637055
Target:  5'- gGGGCGC-CGCGCGCGuGGcGC-CGu- -3'
miRNA:   3'- gCCCGCGcGUGCGCGU-CCaCGuGCuc -5'
23740 3' -62.2 NC_005261.1 + 14962 0.66 0.637055
Target:  5'- gCGGGCGUGcCugGgGCGacUGCGCGGc -3'
miRNA:   3'- -GCCCGCGC-GugCgCGUccACGUGCUc -5'
23740 3' -62.2 NC_005261.1 + 106560 0.66 0.637055
Target:  5'- cCGGGCcgGCGCGCGCcggcccCGGGgccgccGCGCGGc -3'
miRNA:   3'- -GCCCG--CGCGUGCGc-----GUCCa-----CGUGCUc -5'
23740 3' -62.2 NC_005261.1 + 107036 0.66 0.637055
Target:  5'- aGGGCGCGcCACGCGCcGcGUaCACc-- -3'
miRNA:   3'- gCCCGCGC-GUGCGCGuC-CAcGUGcuc -5'
23740 3' -62.2 NC_005261.1 + 23786 0.66 0.627181
Target:  5'- aGGGUGgGCuCGCcgggGCAGGccgGCugGGGc -3'
miRNA:   3'- gCCCGCgCGuGCG----CGUCCa--CGugCUC- -5'
23740 3' -62.2 NC_005261.1 + 35149 0.66 0.627181
Target:  5'- cCGcGGCGCaaGCACGCGCAugcGGacccgaGCGCaGAGa -3'
miRNA:   3'- -GC-CCGCG--CGUGCGCGU---CCa-----CGUG-CUC- -5'
23740 3' -62.2 NC_005261.1 + 114218 0.66 0.627181
Target:  5'- uCGaGGUgGUGCACuCGCGGGUGUACa-- -3'
miRNA:   3'- -GC-CCG-CGCGUGcGCGUCCACGUGcuc -5'
23740 3' -62.2 NC_005261.1 + 96113 0.66 0.627181
Target:  5'- uCGGGaCGuCGCugGCcauggucgaccuGCGGcGgcgGCACGAGa -3'
miRNA:   3'- -GCCC-GC-GCGugCG------------CGUC-Ca--CGUGCUC- -5'
23740 3' -62.2 NC_005261.1 + 23843 0.66 0.627181
Target:  5'- aGGGUGgGCuCGCcgggGCAGGccgGCugGGGc -3'
miRNA:   3'- gCCCGCgCGuGCG----CGUCCa--CGugCUC- -5'
23740 3' -62.2 NC_005261.1 + 110242 0.66 0.617311
Target:  5'- uGGGCgGCGCgGCGCcCGGGggGCuGCGGGc -3'
miRNA:   3'- gCCCG-CGCG-UGCGcGUCCa-CG-UGCUC- -5'
23740 3' -62.2 NC_005261.1 + 64117 0.66 0.617311
Target:  5'- aCGGGCG-GCACGUGCc---GCGCGGc -3'
miRNA:   3'- -GCCCGCgCGUGCGCGuccaCGUGCUc -5'
23740 3' -62.2 NC_005261.1 + 65658 0.66 0.617311
Target:  5'- uGGcGCGCGCcgGCGCGCAGcGccgccaGCAcCGGGu -3'
miRNA:   3'- gCC-CGCGCG--UGCGCGUC-Ca-----CGU-GCUC- -5'
23740 3' -62.2 NC_005261.1 + 108890 0.66 0.617311
Target:  5'- aCGGcCGCGCugcccgccgGCGaGCGGG-GCGCGGGg -3'
miRNA:   3'- -GCCcGCGCG---------UGCgCGUCCaCGUGCUC- -5'
23740 3' -62.2 NC_005261.1 + 38506 0.66 0.617311
Target:  5'- uGGaGCGUcguauaagGCGCGCGCuGGcUGCGCGc- -3'
miRNA:   3'- gCC-CGCG--------CGUGCGCGuCC-ACGUGCuc -5'
23740 3' -62.2 NC_005261.1 + 88149 0.66 0.617311
Target:  5'- gCGGGgGCGCcccggcCGCGCAGccggGC-CGGGg -3'
miRNA:   3'- -GCCCgCGCGu-----GCGCGUCca--CGuGCUC- -5'
23740 3' -62.2 NC_005261.1 + 94876 0.66 0.617311
Target:  5'- cCGGGCGgGCggcccGCGUGCAGccacacgcgcGcGCugGAGg -3'
miRNA:   3'- -GCCCGCgCG-----UGCGCGUC----------CaCGugCUC- -5'
23740 3' -62.2 NC_005261.1 + 127767 0.66 0.617311
Target:  5'- gCGGGCGCGaagACGCcCGGcUGCuCGAGc -3'
miRNA:   3'- -GCCCGCGCg--UGCGcGUCcACGuGCUC- -5'
23740 3' -62.2 NC_005261.1 + 62813 0.66 0.617311
Target:  5'- uGGGCcauauCGC-CGCGCGGG-GCaccgGCGGGg -3'
miRNA:   3'- gCCCGc----GCGuGCGCGUCCaCG----UGCUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.