miRNA display CGI


Results 21 - 40 of 193 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23776 3' -63.4 NC_005261.1 + 10519 0.73 0.257178
Target:  5'- gCUGcGGGCCCCgcggcgcgCuCGCUGUcgcCCCCGGCg -3'
miRNA:   3'- -GGCcUCCGGGGa-------G-GCGAUA---GGGGCCG- -5'
23776 3' -63.4 NC_005261.1 + 1365 0.72 0.263044
Target:  5'- cCCGcGGGCCCUggUCCGC-GUCCCaGGCc -3'
miRNA:   3'- -GGCcUCCGGGG--AGGCGaUAGGGgCCG- -5'
23776 3' -63.4 NC_005261.1 + 9848 0.72 0.27449
Target:  5'- cCCGGGGcaagcccGCCCCagCCGgcCUG-CCCCGGCg -3'
miRNA:   3'- -GGCCUC-------CGGGGa-GGC--GAUaGGGGCCG- -5'
23776 3' -63.4 NC_005261.1 + 9905 0.72 0.27449
Target:  5'- cCCGGGGcaagcccGCCCCagCCGgcCUG-CCCCGGCg -3'
miRNA:   3'- -GGCCUC-------CGGGGa-GGC--GAUaGGGGCCG- -5'
23776 3' -63.4 NC_005261.1 + 4723 0.72 0.275103
Target:  5'- cCCGGAgucggcGGCCCCagaGUcaucgGUCCCCGGCu -3'
miRNA:   3'- -GGCCU------CCGGGGaggCGa----UAGGGGCCG- -5'
23776 3' -63.4 NC_005261.1 + 36579 0.72 0.2876
Target:  5'- gCGGGGGCCCg-CCGCgg-CCaCCGGg -3'
miRNA:   3'- gGCCUCCGGGgaGGCGauaGG-GGCCg -5'
23776 3' -63.4 NC_005261.1 + 4597 0.72 0.292723
Target:  5'- cCCGGcgccaGGGCucCCCUCgGCgucgguccccgaGUCCCCGGCc -3'
miRNA:   3'- -GGCC-----UCCG--GGGAGgCGa-----------UAGGGGCCG- -5'
23776 3' -63.4 NC_005261.1 + 36376 0.71 0.30054
Target:  5'- uCUGGcacGGGCCCCagUCUGCcggCCCUGGCc -3'
miRNA:   3'- -GGCC---UCCGGGG--AGGCGauaGGGGCCG- -5'
23776 3' -63.4 NC_005261.1 + 98970 0.71 0.30054
Target:  5'- cUCGGcAGGUCCCggagCaCGUcGUCCUCGGCa -3'
miRNA:   3'- -GGCC-UCCGGGGa---G-GCGaUAGGGGCCG- -5'
23776 3' -63.4 NC_005261.1 + 105071 0.71 0.30054
Target:  5'- cCCGGcaGGGUCCgccgaCUCCGCg--CCCCGGa -3'
miRNA:   3'- -GGCC--UCCGGG-----GAGGCGauaGGGGCCg -5'
23776 3' -63.4 NC_005261.1 + 67917 0.71 0.307176
Target:  5'- cCCGG-GGCCCUUuuGCgucauUGUCCCCcccgccGGCc -3'
miRNA:   3'- -GGCCuCCGGGGAggCG-----AUAGGGG------CCG- -5'
23776 3' -63.4 NC_005261.1 + 125305 0.71 0.313924
Target:  5'- gCCGGAcccgcGGgCgCUCCGCgg-CCUCGGCg -3'
miRNA:   3'- -GGCCU-----CCgGgGAGGCGauaGGGGCCG- -5'
23776 3' -63.4 NC_005261.1 + 18381 0.71 0.313924
Target:  5'- gUCGGAGGUCCCaaagCCGCUGcggacgcgggCCUCGGa -3'
miRNA:   3'- -GGCCUCCGGGGa---GGCGAUa---------GGGGCCg -5'
23776 3' -63.4 NC_005261.1 + 111250 0.71 0.320784
Target:  5'- gCCGGgcccAGGCCaCCUgCCGCUGagagcgagCaCCCGGCc -3'
miRNA:   3'- -GGCC----UCCGG-GGA-GGCGAUa-------G-GGGCCG- -5'
23776 3' -63.4 NC_005261.1 + 115019 0.71 0.320784
Target:  5'- gCGGAGGCCUCgucccaauagUCUGCcagcaCCCUGGCg -3'
miRNA:   3'- gGCCUCCGGGG----------AGGCGaua--GGGGCCG- -5'
23776 3' -63.4 NC_005261.1 + 98474 0.71 0.320784
Target:  5'- aCGGGcGGCCguCCUCCGCgggCUCgGGCg -3'
miRNA:   3'- gGCCU-CCGG--GGAGGCGauaGGGgCCG- -5'
23776 3' -63.4 NC_005261.1 + 103742 0.71 0.320784
Target:  5'- gCGGcGGCgCCCUCCGCcugcgCCUCGuGCa -3'
miRNA:   3'- gGCCuCCG-GGGAGGCGaua--GGGGC-CG- -5'
23776 3' -63.4 NC_005261.1 + 90094 0.71 0.321476
Target:  5'- aCGGGGGCCCgUUCGCcGgcugggccgacgcggCCCgCGGCg -3'
miRNA:   3'- gGCCUCCGGGgAGGCGaUa--------------GGG-GCCG- -5'
23776 3' -63.4 NC_005261.1 + 62551 0.71 0.334838
Target:  5'- gCCGaGAGGCgCCgCCaGCaugcgCCCCGGCg -3'
miRNA:   3'- -GGC-CUCCGgGGaGG-CGaua--GGGGCCG- -5'
23776 3' -63.4 NC_005261.1 + 98567 0.7 0.342032
Target:  5'- gCGGGcGGCCguCCUCCGCgggCUCgGGCg -3'
miRNA:   3'- gGCCU-CCGG--GGAGGCGauaGGGgCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.