miRNA display CGI


Results 1 - 20 of 222 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23794 5' -53.8 NC_005261.1 + 66448 0.65 0.938729
Target:  5'- --cGCGGCGcgCGCCGCCGgucccgcCAGgcgcgcguccucgcGGUACa -3'
miRNA:   3'- aauCGUCGCa-GCGGCGGU-------GUU--------------UCAUG- -5'
23794 5' -53.8 NC_005261.1 + 100662 0.66 0.935702
Target:  5'- -cGGCGcGCGUCGCgggguuCGCgCGC-GAGUGCa -3'
miRNA:   3'- aaUCGU-CGCAGCG------GCG-GUGuUUCAUG- -5'
23794 5' -53.8 NC_005261.1 + 125725 0.66 0.935702
Target:  5'- -gGGCucGGCuGggGCCGCCGCAAGGggGCc -3'
miRNA:   3'- aaUCG--UCG-CagCGGCGGUGUUUCa-UG- -5'
23794 5' -53.8 NC_005261.1 + 1833 0.66 0.935702
Target:  5'- -aAGCGGCcUCGgCGCgCGCGAAG-GCg -3'
miRNA:   3'- aaUCGUCGcAGCgGCG-GUGUUUCaUG- -5'
23794 5' -53.8 NC_005261.1 + 64769 0.66 0.935702
Target:  5'- -cGGcCAGC-UCGCggcgCGCCACGAcGUGCg -3'
miRNA:   3'- aaUC-GUCGcAGCG----GCGGUGUUuCAUG- -5'
23794 5' -53.8 NC_005261.1 + 131156 0.66 0.935702
Target:  5'- --uGCGGCGcUCGCCGCCuucugcugccGCAGcGGcUACg -3'
miRNA:   3'- aauCGUCGC-AGCGGCGG----------UGUU-UC-AUG- -5'
23794 5' -53.8 NC_005261.1 + 74760 0.66 0.935702
Target:  5'- -cGGCAGCG-CGCCacaGgCGCGGAGgucgACg -3'
miRNA:   3'- aaUCGUCGCaGCGG---CgGUGUUUCa---UG- -5'
23794 5' -53.8 NC_005261.1 + 33465 0.66 0.935702
Target:  5'- --cGCAGC--CGCCGCCGCAGccGGg-- -3'
miRNA:   3'- aauCGUCGcaGCGGCGGUGUU--UCaug -5'
23794 5' -53.8 NC_005261.1 + 127312 0.66 0.935702
Target:  5'- cUGGCGGUGgggcccUGCCGCCcGCGGGGgcCg -3'
miRNA:   3'- aAUCGUCGCa-----GCGGCGG-UGUUUCauG- -5'
23794 5' -53.8 NC_005261.1 + 14743 0.66 0.933632
Target:  5'- gUGGCAGgGgcgaucggcgccgCGCCGCgACAGGGggGCc -3'
miRNA:   3'- aAUCGUCgCa------------GCGGCGgUGUUUCa-UG- -5'
23794 5' -53.8 NC_005261.1 + 32149 0.66 0.93045
Target:  5'- -gGGCucGGCG-CGCCGCUGCGGccgguGUACc -3'
miRNA:   3'- aaUCG--UCGCaGCGGCGGUGUUu----CAUG- -5'
23794 5' -53.8 NC_005261.1 + 132158 0.66 0.93045
Target:  5'- -gAGC-GCGcCGCCGCUGCAGgcAGcGCg -3'
miRNA:   3'- aaUCGuCGCaGCGGCGGUGUU--UCaUG- -5'
23794 5' -53.8 NC_005261.1 + 102695 0.66 0.93045
Target:  5'- --cGCGGcCGUCGCUGCCGCc------ -3'
miRNA:   3'- aauCGUC-GCAGCGGCGGUGuuucaug -5'
23794 5' -53.8 NC_005261.1 + 107726 0.66 0.93045
Target:  5'- -cGGCAgGCGgcugCGCCucgGCCGCGGGGgggGCc -3'
miRNA:   3'- aaUCGU-CGCa---GCGG---CGGUGUUUCa--UG- -5'
23794 5' -53.8 NC_005261.1 + 31297 0.66 0.93045
Target:  5'- --cGCGGCc-CGCCGCCGCGcGGgGCc -3'
miRNA:   3'- aauCGUCGcaGCGGCGGUGUuUCaUG- -5'
23794 5' -53.8 NC_005261.1 + 35850 0.66 0.928823
Target:  5'- -aGGCGGCGcaccgaaauggaggUgGCCGCCu--GGGUGCg -3'
miRNA:   3'- aaUCGUCGC--------------AgCGGCGGuguUUCAUG- -5'
23794 5' -53.8 NC_005261.1 + 101406 0.66 0.927173
Target:  5'- -cAGCAGCGcCGCUugcgucacgacgucgGCCGCcGAGgcgGCg -3'
miRNA:   3'- aaUCGUCGCaGCGG---------------CGGUGuUUCa--UG- -5'
23794 5' -53.8 NC_005261.1 + 3554 0.66 0.924937
Target:  5'- --cGCGGCGggcgCGgCGCCGCuAAGGcGCg -3'
miRNA:   3'- aauCGUCGCa---GCgGCGGUG-UUUCaUG- -5'
23794 5' -53.8 NC_005261.1 + 32267 0.66 0.924937
Target:  5'- --cGCAcGCcgaggCGCCGCCGCu-GGUGCu -3'
miRNA:   3'- aauCGU-CGca---GCGGCGGUGuuUCAUG- -5'
23794 5' -53.8 NC_005261.1 + 106110 0.66 0.924937
Target:  5'- -cGGcCGGCGUCGCCGgCGCGc----- -3'
miRNA:   3'- aaUC-GUCGCAGCGGCgGUGUuucaug -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.