miRNA display CGI


Results 1 - 20 of 576 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23809 5' -66.7 NC_005261.1 + 77504 0.65 0.395836
Target:  5'- cUGCCGcCCGCCAucgccGCcGCGcccccgcccccgauGCCGGGCu -3'
miRNA:   3'- -ACGGCcGGCGGU-----CGuCGU--------------CGGCCCGu -5'
23809 5' -66.7 NC_005261.1 + 7634 0.66 0.393415
Target:  5'- cUGCCGccGCUGCCGcGUcugcuuuucgcuucaAGCGGCCGcGGCc -3'
miRNA:   3'- -ACGGC--CGGCGGU-CG---------------UCGUCGGC-CCGu -5'
23809 5' -66.7 NC_005261.1 + 33083 0.66 0.390203
Target:  5'- cUGgCGGCCGCCGcCAcauccccuGC-GUCGGGCAc -3'
miRNA:   3'- -ACgGCCGGCGGUcGU--------CGuCGGCCCGU- -5'
23809 5' -66.7 NC_005261.1 + 82806 0.66 0.390203
Target:  5'- cGCC-GCgGCCAcCuGCAGCCGGuGCc -3'
miRNA:   3'- aCGGcCGgCGGUcGuCGUCGGCC-CGu -5'
23809 5' -66.7 NC_005261.1 + 16720 0.66 0.390203
Target:  5'- cGCCGGUacugGCCcucGGCgAGCcGCgCGGGCGc -3'
miRNA:   3'- aCGGCCGg---CGG---UCG-UCGuCG-GCCCGU- -5'
23809 5' -66.7 NC_005261.1 + 81511 0.66 0.390203
Target:  5'- cGCgCGcGCCGCCGcCGGC-GCCaGGCGc -3'
miRNA:   3'- aCG-GC-CGGCGGUcGUCGuCGGcCCGU- -5'
23809 5' -66.7 NC_005261.1 + 68591 0.66 0.390203
Target:  5'- gGCgGGCCGCgGG-AGCggGGCCGacGGCGu -3'
miRNA:   3'- aCGgCCGGCGgUCgUCG--UCGGC--CCGU- -5'
23809 5' -66.7 NC_005261.1 + 72177 0.66 0.390203
Target:  5'- -cCCGGCguccgagaCGUUGGCGGCGGCCGcgcgcGGCAg -3'
miRNA:   3'- acGGCCG--------GCGGUCGUCGUCGGC-----CCGU- -5'
23809 5' -66.7 NC_005261.1 + 109359 0.66 0.382249
Target:  5'- cGCCGuccaGCCGCUcgAGC-GCGGCCcagaGGGCc -3'
miRNA:   3'- aCGGC----CGGCGG--UCGuCGUCGG----CCCGu -5'
23809 5' -66.7 NC_005261.1 + 134025 0.66 0.382249
Target:  5'- cGCC-GCCGCCGcgcucGCGGCcauGGCCGGcCAc -3'
miRNA:   3'- aCGGcCGGCGGU-----CGUCG---UCGGCCcGU- -5'
23809 5' -66.7 NC_005261.1 + 119995 0.66 0.382249
Target:  5'- cGCUGGagggCGCCGGCuacGCGGCCGuGuGCc -3'
miRNA:   3'- aCGGCCg---GCGGUCGu--CGUCGGC-C-CGu -5'
23809 5' -66.7 NC_005261.1 + 2451 0.66 0.382249
Target:  5'- cGCCucggGGUCGaaGGCgAGC-GCCGGGCGc -3'
miRNA:   3'- aCGG----CCGGCggUCG-UCGuCGGCCCGU- -5'
23809 5' -66.7 NC_005261.1 + 48648 0.66 0.382249
Target:  5'- cGCCGGCCcccgcccggagaGCCGcGCGGCAacgGCgacuaCGGGCc -3'
miRNA:   3'- aCGGCCGG------------CGGU-CGUCGU---CG-----GCCCGu -5'
23809 5' -66.7 NC_005261.1 + 84695 0.66 0.382249
Target:  5'- aGCCGGCgCGCgGGCAcGCgAGCacaaaGcGGCGc -3'
miRNA:   3'- aCGGCCG-GCGgUCGU-CG-UCGg----C-CCGU- -5'
23809 5' -66.7 NC_005261.1 + 55337 0.66 0.382249
Target:  5'- gGgCGGCCGUCucucccggaaAGCAGCGGCa-GGCc -3'
miRNA:   3'- aCgGCCGGCGG----------UCGUCGUCGgcCCGu -5'
23809 5' -66.7 NC_005261.1 + 14765 0.66 0.382249
Target:  5'- cGCCgcgacaggggGGCCGCCccgcGCAGguGCCGcucccgcaGGCu -3'
miRNA:   3'- aCGG----------CCGGCGGu---CGUCguCGGC--------CCGu -5'
23809 5' -66.7 NC_005261.1 + 59007 0.66 0.382249
Target:  5'- cGCCgGGCuCGcCCAGCGGCGccGCCaggaacGGGUg -3'
miRNA:   3'- aCGG-CCG-GC-GGUCGUCGU--CGG------CCCGu -5'
23809 5' -66.7 NC_005261.1 + 59987 0.66 0.382249
Target:  5'- cGCCGuCCGCacccucgGGCAGCGcGaCGGGCAg -3'
miRNA:   3'- aCGGCcGGCGg------UCGUCGU-CgGCCCGU- -5'
23809 5' -66.7 NC_005261.1 + 48904 0.66 0.382249
Target:  5'- aGuuGGCCuCUAGC-GCgAGCCcGGGCGc -3'
miRNA:   3'- aCggCCGGcGGUCGuCG-UCGG-CCCGU- -5'
23809 5' -66.7 NC_005261.1 + 67801 0.66 0.382249
Target:  5'- cGCCucggcGCCGcCCAGUGGCAaCuCGGGCGc -3'
miRNA:   3'- aCGGc----CGGC-GGUCGUCGUcG-GCCCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.