Results 1 - 20 of 576 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23809 | 5' | -66.7 | NC_005261.1 | + | 77504 | 0.65 | 0.395836 |
Target: 5'- cUGCCGcCCGCCAucgccGCcGCGcccccgcccccgauGCCGGGCu -3' miRNA: 3'- -ACGGCcGGCGGU-----CGuCGU--------------CGGCCCGu -5' |
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23809 | 5' | -66.7 | NC_005261.1 | + | 7634 | 0.66 | 0.393415 |
Target: 5'- cUGCCGccGCUGCCGcGUcugcuuuucgcuucaAGCGGCCGcGGCc -3' miRNA: 3'- -ACGGC--CGGCGGU-CG---------------UCGUCGGC-CCGu -5' |
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23809 | 5' | -66.7 | NC_005261.1 | + | 33083 | 0.66 | 0.390203 |
Target: 5'- cUGgCGGCCGCCGcCAcauccccuGC-GUCGGGCAc -3' miRNA: 3'- -ACgGCCGGCGGUcGU--------CGuCGGCCCGU- -5' |
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23809 | 5' | -66.7 | NC_005261.1 | + | 16720 | 0.66 | 0.390203 |
Target: 5'- cGCCGGUacugGCCcucGGCgAGCcGCgCGGGCGc -3' miRNA: 3'- aCGGCCGg---CGG---UCG-UCGuCG-GCCCGU- -5' |
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23809 | 5' | -66.7 | NC_005261.1 | + | 81511 | 0.66 | 0.390203 |
Target: 5'- cGCgCGcGCCGCCGcCGGC-GCCaGGCGc -3' miRNA: 3'- aCG-GC-CGGCGGUcGUCGuCGGcCCGU- -5' |
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23809 | 5' | -66.7 | NC_005261.1 | + | 82806 | 0.66 | 0.390203 |
Target: 5'- cGCC-GCgGCCAcCuGCAGCCGGuGCc -3' miRNA: 3'- aCGGcCGgCGGUcGuCGUCGGCC-CGu -5' |
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23809 | 5' | -66.7 | NC_005261.1 | + | 72177 | 0.66 | 0.390203 |
Target: 5'- -cCCGGCguccgagaCGUUGGCGGCGGCCGcgcgcGGCAg -3' miRNA: 3'- acGGCCG--------GCGGUCGUCGUCGGC-----CCGU- -5' |
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23809 | 5' | -66.7 | NC_005261.1 | + | 68591 | 0.66 | 0.390203 |
Target: 5'- gGCgGGCCGCgGG-AGCggGGCCGacGGCGu -3' miRNA: 3'- aCGgCCGGCGgUCgUCG--UCGGC--CCGU- -5' |
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23809 | 5' | -66.7 | NC_005261.1 | + | 59987 | 0.66 | 0.382249 |
Target: 5'- cGCCGuCCGCacccucgGGCAGCGcGaCGGGCAg -3' miRNA: 3'- aCGGCcGGCGg------UCGUCGU-CgGCCCGU- -5' |
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23809 | 5' | -66.7 | NC_005261.1 | + | 59007 | 0.66 | 0.382249 |
Target: 5'- cGCCgGGCuCGcCCAGCGGCGccGCCaggaacGGGUg -3' miRNA: 3'- aCGG-CCG-GC-GGUCGUCGU--CGG------CCCGu -5' |
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23809 | 5' | -66.7 | NC_005261.1 | + | 55337 | 0.66 | 0.382249 |
Target: 5'- gGgCGGCCGUCucucccggaaAGCAGCGGCa-GGCc -3' miRNA: 3'- aCgGCCGGCGG----------UCGUCGUCGgcCCGu -5' |
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23809 | 5' | -66.7 | NC_005261.1 | + | 48904 | 0.66 | 0.382249 |
Target: 5'- aGuuGGCCuCUAGC-GCgAGCCcGGGCGc -3' miRNA: 3'- aCggCCGGcGGUCGuCG-UCGG-CCCGU- -5' |
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23809 | 5' | -66.7 | NC_005261.1 | + | 134025 | 0.66 | 0.382249 |
Target: 5'- cGCC-GCCGCCGcgcucGCGGCcauGGCCGGcCAc -3' miRNA: 3'- aCGGcCGGCGGU-----CGUCG---UCGGCCcGU- -5' |
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23809 | 5' | -66.7 | NC_005261.1 | + | 2451 | 0.66 | 0.382249 |
Target: 5'- cGCCucggGGUCGaaGGCgAGC-GCCGGGCGc -3' miRNA: 3'- aCGG----CCGGCggUCG-UCGuCGGCCCGU- -5' |
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23809 | 5' | -66.7 | NC_005261.1 | + | 14765 | 0.66 | 0.382249 |
Target: 5'- cGCCgcgacaggggGGCCGCCccgcGCAGguGCCGcucccgcaGGCu -3' miRNA: 3'- aCGG----------CCGGCGGu---CGUCguCGGC--------CCGu -5' |
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23809 | 5' | -66.7 | NC_005261.1 | + | 67801 | 0.66 | 0.382249 |
Target: 5'- cGCCucggcGCCGcCCAGUGGCAaCuCGGGCGc -3' miRNA: 3'- aCGGc----CGGC-GGUCGUCGUcG-GCCCGU- -5' |
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23809 | 5' | -66.7 | NC_005261.1 | + | 119995 | 0.66 | 0.382249 |
Target: 5'- cGCUGGagggCGCCGGCuacGCGGCCGuGuGCc -3' miRNA: 3'- aCGGCCg---GCGGUCGu--CGUCGGC-C-CGu -5' |
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23809 | 5' | -66.7 | NC_005261.1 | + | 109359 | 0.66 | 0.382249 |
Target: 5'- cGCCGuccaGCCGCUcgAGC-GCGGCCcagaGGGCc -3' miRNA: 3'- aCGGC----CGGCGG--UCGuCGUCGG----CCCGu -5' |
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23809 | 5' | -66.7 | NC_005261.1 | + | 48648 | 0.66 | 0.382249 |
Target: 5'- cGCCGGCCcccgcccggagaGCCGcGCGGCAacgGCgacuaCGGGCc -3' miRNA: 3'- aCGGCCGG------------CGGU-CGUCGU---CG-----GCCCGu -5' |
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23809 | 5' | -66.7 | NC_005261.1 | + | 84695 | 0.66 | 0.382249 |
Target: 5'- aGCCGGCgCGCgGGCAcGCgAGCacaaaGcGGCGc -3' miRNA: 3'- aCGGCCG-GCGgUCGU-CG-UCGg----C-CCGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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