Results 1 - 20 of 226 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23819 | 5' | -65.3 | NC_005261.1 | + | 72403 | 0.66 | 0.464714 |
Target: 5'- -uCGUaCCGCGCGUCCCCgcccuugcgCUCGCcGCg -3' miRNA: 3'- auGCG-GGUGCGCGGGGG---------GAGCGaCGa -5' |
|||||||
23819 | 5' | -65.3 | NC_005261.1 | + | 31254 | 0.66 | 0.464714 |
Target: 5'- gGCGCCCG-GCGCUcgccuucgaCCCCgaggCGCUGg- -3' miRNA: 3'- aUGCGGGUgCGCGG---------GGGGa---GCGACga -5' |
|||||||
23819 | 5' | -65.3 | NC_005261.1 | + | 106956 | 0.66 | 0.464714 |
Target: 5'- --gGCCCggGCGCGCUCCgCCUCgGC-GCg -3' miRNA: 3'- augCGGG--UGCGCGGGG-GGAG-CGaCGa -5' |
|||||||
23819 | 5' | -65.3 | NC_005261.1 | + | 10535 | 0.66 | 0.464714 |
Target: 5'- cGCGCUCGCuGuCGCCCCCggcgCGcCUGCc -3' miRNA: 3'- aUGCGGGUG-C-GCGGGGGga--GC-GACGa -5' |
|||||||
23819 | 5' | -65.3 | NC_005261.1 | + | 98286 | 0.66 | 0.464714 |
Target: 5'- gACGCCCgGCGCGUCCgcggCCUCGgggGCg -3' miRNA: 3'- aUGCGGG-UGCGCGGGg---GGAGCga-CGa -5' |
|||||||
23819 | 5' | -65.3 | NC_005261.1 | + | 51315 | 0.66 | 0.464714 |
Target: 5'- cACGCCgGCGCcgccGCCgCCUUCGUcggGCUc -3' miRNA: 3'- aUGCGGgUGCG----CGGgGGGAGCGa--CGA- -5' |
|||||||
23819 | 5' | -65.3 | NC_005261.1 | + | 82370 | 0.66 | 0.464714 |
Target: 5'- cGCGCgCGCGCGCCgCCagCGCcGCc -3' miRNA: 3'- aUGCGgGUGCGCGGgGGgaGCGaCGa -5' |
|||||||
23819 | 5' | -65.3 | NC_005261.1 | + | 15185 | 0.66 | 0.464714 |
Target: 5'- gGCGCCCGCGggaaaCGCCgCCaUCGC-GCg -3' miRNA: 3'- aUGCGGGUGC-----GCGGgGGgAGCGaCGa -5' |
|||||||
23819 | 5' | -65.3 | NC_005261.1 | + | 85370 | 0.66 | 0.464714 |
Target: 5'- gAUGUUCGCGcCGCCgCCCUCGg-GCUu -3' miRNA: 3'- aUGCGGGUGC-GCGGgGGGAGCgaCGA- -5' |
|||||||
23819 | 5' | -65.3 | NC_005261.1 | + | 79798 | 0.66 | 0.464714 |
Target: 5'- cACGgCCAUgGCGUCCCCCaacaugCGCgcgGCg -3' miRNA: 3'- aUGCgGGUG-CGCGGGGGGa-----GCGa--CGa -5' |
|||||||
23819 | 5' | -65.3 | NC_005261.1 | + | 46508 | 0.66 | 0.464714 |
Target: 5'- cGCaGCCCGgcguCGCGCagcaCCgCCUCcGCUGCg -3' miRNA: 3'- aUG-CGGGU----GCGCGg---GG-GGAG-CGACGa -5' |
|||||||
23819 | 5' | -65.3 | NC_005261.1 | + | 53290 | 0.66 | 0.464714 |
Target: 5'- gGCGCCaa-GCGCCCCCgUgCGCggGUc -3' miRNA: 3'- aUGCGGgugCGCGGGGGgA-GCGa-CGa -5' |
|||||||
23819 | 5' | -65.3 | NC_005261.1 | + | 58254 | 0.66 | 0.464714 |
Target: 5'- cAUGCCgCGcCGCGCCgCgCUCGCcGCg -3' miRNA: 3'- aUGCGG-GU-GCGCGGgGgGAGCGaCGa -5' |
|||||||
23819 | 5' | -65.3 | NC_005261.1 | + | 102896 | 0.66 | 0.455841 |
Target: 5'- --aGCCC-CGCGCCCCuggCC-CGCaGCg -3' miRNA: 3'- augCGGGuGCGCGGGG---GGaGCGaCGa -5' |
|||||||
23819 | 5' | -65.3 | NC_005261.1 | + | 55765 | 0.66 | 0.455841 |
Target: 5'- cGCGCgCCGcCGCccggaucuGCCCCCCcaagUCGCgGCg -3' miRNA: 3'- aUGCG-GGU-GCG--------CGGGGGG----AGCGaCGa -5' |
|||||||
23819 | 5' | -65.3 | NC_005261.1 | + | 116055 | 0.66 | 0.455841 |
Target: 5'- --gGCCUugGCGCCCCgCguggCGC-GCc -3' miRNA: 3'- augCGGGugCGCGGGGgGa---GCGaCGa -5' |
|||||||
23819 | 5' | -65.3 | NC_005261.1 | + | 39323 | 0.66 | 0.455841 |
Target: 5'- cGCGUCCAacCGCGCCgCCgCggccaaGCUGCg -3' miRNA: 3'- aUGCGGGU--GCGCGG-GGgGag----CGACGa -5' |
|||||||
23819 | 5' | -65.3 | NC_005261.1 | + | 87232 | 0.66 | 0.455841 |
Target: 5'- aGCGgC-ACGCGCaCCgCCUCGCUcGCg -3' miRNA: 3'- aUGCgGgUGCGCG-GGgGGAGCGA-CGa -5' |
|||||||
23819 | 5' | -65.3 | NC_005261.1 | + | 62221 | 0.66 | 0.455841 |
Target: 5'- cGCGgCCGCgucuGCGCCCUCgCggUGCUGCa -3' miRNA: 3'- aUGCgGGUG----CGCGGGGG-Ga-GCGACGa -5' |
|||||||
23819 | 5' | -65.3 | NC_005261.1 | + | 3804 | 0.66 | 0.455841 |
Target: 5'- --aGCUCGCGCaGCCgCUCgcgCGCUGCc -3' miRNA: 3'- augCGGGUGCG-CGGgGGGa--GCGACGa -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home