miRNA display CGI


Results 1 - 20 of 226 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23819 5' -65.3 NC_005261.1 + 82370 0.66 0.464714
Target:  5'- cGCGCgCGCGCGCCgCCagCGCcGCc -3'
miRNA:   3'- aUGCGgGUGCGCGGgGGgaGCGaCGa -5'
23819 5' -65.3 NC_005261.1 + 106956 0.66 0.464714
Target:  5'- --gGCCCggGCGCGCUCCgCCUCgGC-GCg -3'
miRNA:   3'- augCGGG--UGCGCGGGG-GGAG-CGaCGa -5'
23819 5' -65.3 NC_005261.1 + 10535 0.66 0.464714
Target:  5'- cGCGCUCGCuGuCGCCCCCggcgCGcCUGCc -3'
miRNA:   3'- aUGCGGGUG-C-GCGGGGGga--GC-GACGa -5'
23819 5' -65.3 NC_005261.1 + 85370 0.66 0.464714
Target:  5'- gAUGUUCGCGcCGCCgCCCUCGg-GCUu -3'
miRNA:   3'- aUGCGGGUGC-GCGGgGGGAGCgaCGA- -5'
23819 5' -65.3 NC_005261.1 + 79798 0.66 0.464714
Target:  5'- cACGgCCAUgGCGUCCCCCaacaugCGCgcgGCg -3'
miRNA:   3'- aUGCgGGUG-CGCGGGGGGa-----GCGa--CGa -5'
23819 5' -65.3 NC_005261.1 + 58254 0.66 0.464714
Target:  5'- cAUGCCgCGcCGCGCCgCgCUCGCcGCg -3'
miRNA:   3'- aUGCGG-GU-GCGCGGgGgGAGCGaCGa -5'
23819 5' -65.3 NC_005261.1 + 51315 0.66 0.464714
Target:  5'- cACGCCgGCGCcgccGCCgCCUUCGUcggGCUc -3'
miRNA:   3'- aUGCGGgUGCG----CGGgGGGAGCGa--CGA- -5'
23819 5' -65.3 NC_005261.1 + 46508 0.66 0.464714
Target:  5'- cGCaGCCCGgcguCGCGCagcaCCgCCUCcGCUGCg -3'
miRNA:   3'- aUG-CGGGU----GCGCGg---GG-GGAG-CGACGa -5'
23819 5' -65.3 NC_005261.1 + 31254 0.66 0.464714
Target:  5'- gGCGCCCG-GCGCUcgccuucgaCCCCgaggCGCUGg- -3'
miRNA:   3'- aUGCGGGUgCGCGG---------GGGGa---GCGACga -5'
23819 5' -65.3 NC_005261.1 + 98286 0.66 0.464714
Target:  5'- gACGCCCgGCGCGUCCgcggCCUCGgggGCg -3'
miRNA:   3'- aUGCGGG-UGCGCGGGg---GGAGCga-CGa -5'
23819 5' -65.3 NC_005261.1 + 15185 0.66 0.464714
Target:  5'- gGCGCCCGCGggaaaCGCCgCCaUCGC-GCg -3'
miRNA:   3'- aUGCGGGUGC-----GCGGgGGgAGCGaCGa -5'
23819 5' -65.3 NC_005261.1 + 53290 0.66 0.464714
Target:  5'- gGCGCCaa-GCGCCCCCgUgCGCggGUc -3'
miRNA:   3'- aUGCGGgugCGCGGGGGgA-GCGa-CGa -5'
23819 5' -65.3 NC_005261.1 + 72403 0.66 0.464714
Target:  5'- -uCGUaCCGCGCGUCCCCgcccuugcgCUCGCcGCg -3'
miRNA:   3'- auGCG-GGUGCGCGGGGG---------GAGCGaCGa -5'
23819 5' -65.3 NC_005261.1 + 87232 0.66 0.455841
Target:  5'- aGCGgC-ACGCGCaCCgCCUCGCUcGCg -3'
miRNA:   3'- aUGCgGgUGCGCG-GGgGGAGCGA-CGa -5'
23819 5' -65.3 NC_005261.1 + 3804 0.66 0.455841
Target:  5'- --aGCUCGCGCaGCCgCUCgcgCGCUGCc -3'
miRNA:   3'- augCGGGUGCG-CGGgGGGa--GCGACGa -5'
23819 5' -65.3 NC_005261.1 + 62221 0.66 0.455841
Target:  5'- cGCGgCCGCgucuGCGCCCUCgCggUGCUGCa -3'
miRNA:   3'- aUGCgGGUG----CGCGGGGG-Ga-GCGACGa -5'
23819 5' -65.3 NC_005261.1 + 116055 0.66 0.455841
Target:  5'- --gGCCUugGCGCCCCgCguggCGC-GCc -3'
miRNA:   3'- augCGGGugCGCGGGGgGa---GCGaCGa -5'
23819 5' -65.3 NC_005261.1 + 36856 0.66 0.455841
Target:  5'- --aGCCCGCGCuccGCCCgCCC-CGCacGCUn -3'
miRNA:   3'- augCGGGUGCG---CGGG-GGGaGCGa-CGA- -5'
23819 5' -65.3 NC_005261.1 + 39323 0.66 0.455841
Target:  5'- cGCGUCCAacCGCGCCgCCgCggccaaGCUGCg -3'
miRNA:   3'- aUGCGGGU--GCGCGG-GGgGag----CGACGa -5'
23819 5' -65.3 NC_005261.1 + 55765 0.66 0.455841
Target:  5'- cGCGCgCCGcCGCccggaucuGCCCCCCcaagUCGCgGCg -3'
miRNA:   3'- aUGCG-GGU-GCG--------CGGGGGG----AGCGaCGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.