miRNA display CGI


Results 1 - 20 of 572 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23820 5' -68.8 NC_005261.1 + 127319 0.65 0.382313
Target:  5'- uGgGGCCcUGCCGCCCgcgggggCCgGaGCGGCGg -3'
miRNA:   3'- -CgCCGGcGCGGCGGG-------GGgC-CGCUGCa -5'
23820 5' -68.8 NC_005261.1 + 97921 0.65 0.382313
Target:  5'- gGCGuccCCGCuguacugGCCGCCagCUCCGGCGGCa- -3'
miRNA:   3'- -CGCc--GGCG-------CGGCGG--GGGGCCGCUGca -5'
23820 5' -68.8 NC_005261.1 + 51254 0.66 0.378526
Target:  5'- gGCGGCCGUGCUGCUgcuguCCCacaagaucgccguccUGGCcGCGg -3'
miRNA:   3'- -CGCCGGCGCGGCGG-----GGG---------------GCCGcUGCa -5'
23820 5' -68.8 NC_005261.1 + 58258 0.66 0.378526
Target:  5'- cCGcGCCGCGCCGCgCUCgccgcgcucacggggCCGGCG-CGc -3'
miRNA:   3'- cGC-CGGCGCGGCG-GGG---------------GGCCGCuGCa -5'
23820 5' -68.8 NC_005261.1 + 117281 0.66 0.378526
Target:  5'- gGCGaGCCugGCGCCgaGCCcgcccucgagcccagCCCCGGCG-CGg -3'
miRNA:   3'- -CGC-CGG--CGCGG--CGG---------------GGGGCCGCuGCa -5'
23820 5' -68.8 NC_005261.1 + 83106 0.66 0.375514
Target:  5'- aGCGccGCCGcCGCCGCCgCCagCCGcGCGcGCGg -3'
miRNA:   3'- -CGC--CGGC-GCGGCGG-GG--GGC-CGC-UGCa -5'
23820 5' -68.8 NC_005261.1 + 46394 0.66 0.375514
Target:  5'- cCGGCCcCGUCGCCga-CGGUGGCGUc -3'
miRNA:   3'- cGCCGGcGCGGCGGgggGCCGCUGCA- -5'
23820 5' -68.8 NC_005261.1 + 77572 0.66 0.375514
Target:  5'- cGCcGCCGCGCCcugGCaCCCCgGGU-ACGg -3'
miRNA:   3'- -CGcCGGCGCGG---CG-GGGGgCCGcUGCa -5'
23820 5' -68.8 NC_005261.1 + 116605 0.66 0.375514
Target:  5'- uGCuGCCGCaGCCcucgcaccGCCCgCCCGcCGACGa -3'
miRNA:   3'- -CGcCGGCG-CGG--------CGGG-GGGCcGCUGCa -5'
23820 5' -68.8 NC_005261.1 + 20154 0.66 0.375514
Target:  5'- -aGGCCGCGCCgGCUCUCUGcuCGGCu- -3'
miRNA:   3'- cgCCGGCGCGG-CGGGGGGCc-GCUGca -5'
23820 5' -68.8 NC_005261.1 + 1802 0.66 0.375514
Target:  5'- aGCGGCgGCGCCccgggguagaGCCgcgcguaagcggCCUCGGCGcGCGc -3'
miRNA:   3'- -CGCCGgCGCGG----------CGG------------GGGGCCGC-UGCa -5'
23820 5' -68.8 NC_005261.1 + 106380 0.66 0.375514
Target:  5'- cGUcGCCGuUGCCGCCgCUguCGGCGACa- -3'
miRNA:   3'- -CGcCGGC-GCGGCGGgGG--GCCGCUGca -5'
23820 5' -68.8 NC_005261.1 + 46582 0.66 0.375514
Target:  5'- cGCGGCCucGCGCgacaCGgCCCCgGGCacuGCGUc -3'
miRNA:   3'- -CGCCGG--CGCG----GCgGGGGgCCGc--UGCA- -5'
23820 5' -68.8 NC_005261.1 + 121086 0.66 0.375514
Target:  5'- gGCGGCCGCcagCGCCUCCaGGCcguGCGg -3'
miRNA:   3'- -CGCCGGCGcg-GCGGGGGgCCGc--UGCa -5'
23820 5' -68.8 NC_005261.1 + 4416 0.66 0.375514
Target:  5'- cGCuGCCGgGCCagGCCUCgCCGGagGGCGUc -3'
miRNA:   3'- -CGcCGGCgCGG--CGGGG-GGCCg-CUGCA- -5'
23820 5' -68.8 NC_005261.1 + 119537 0.66 0.375514
Target:  5'- cGCGGCCGaGCaagGCCCCgCCGcGgGGCc- -3'
miRNA:   3'- -CGCCGGCgCGg--CGGGG-GGC-CgCUGca -5'
23820 5' -68.8 NC_005261.1 + 1608 0.66 0.375514
Target:  5'- gGCuGGCCGCcUCGCCCUCC-GCGAaGUc -3'
miRNA:   3'- -CG-CCGGCGcGGCGGGGGGcCGCUgCA- -5'
23820 5' -68.8 NC_005261.1 + 86877 0.66 0.375514
Target:  5'- cGCGGCgGCcuugGCCGCgCCCUGGuCcGCGn -3'
miRNA:   3'- -CGCCGgCG----CGGCGgGGGGCC-GcUGCa -5'
23820 5' -68.8 NC_005261.1 + 117356 0.66 0.374764
Target:  5'- gGC-GCCGCccgcaagGCCGCCCuCCUGGaGGCGc -3'
miRNA:   3'- -CGcCGGCG-------CGGCGGG-GGGCCgCUGCa -5'
23820 5' -68.8 NC_005261.1 + 45148 0.66 0.374014
Target:  5'- aCGGCCGCGCCGaggaagugaCCuGCGACGc -3'
miRNA:   3'- cGCCGGCGCGGCgggg-----GGcCGCUGCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.