miRNA display CGI


Results 1 - 20 of 380 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23839 3' -59.2 NC_005261.1 + 123173 0.66 0.784192
Target:  5'- gGCGCGCggGCGuggugGCUGgUGUggGCGGACc -3'
miRNA:   3'- aCGCGCGa-UGC-----UGACgGCG--UGCCUGc -5'
23839 3' -59.2 NC_005261.1 + 84601 0.66 0.784192
Target:  5'- aGCGCGCcguuGCUGCCGUugaugaucucGCGGAgCGc -3'
miRNA:   3'- aCGCGCGaugcUGACGGCG----------UGCCU-GC- -5'
23839 3' -59.2 NC_005261.1 + 126490 0.66 0.784192
Target:  5'- cGCGcCGCcACcaGCUGCCGCAggcggucugccUGGGCGc -3'
miRNA:   3'- aCGC-GCGaUGc-UGACGGCGU-----------GCCUGC- -5'
23839 3' -59.2 NC_005261.1 + 108878 0.66 0.784192
Target:  5'- aGCGgGUggACGACgGCCGCGCugcccgccGGCGa -3'
miRNA:   3'- aCGCgCGa-UGCUGaCGGCGUGc-------CUGC- -5'
23839 3' -59.2 NC_005261.1 + 51525 0.66 0.784192
Target:  5'- gGCGCcggGCUGgGGCUGUCGCuagcGCaGACa -3'
miRNA:   3'- aCGCG---CGAUgCUGACGGCG----UGcCUGc -5'
23839 3' -59.2 NC_005261.1 + 123846 0.66 0.784192
Target:  5'- cGuCGCGCUgccuaGCGGCaGCCGCuCGuACGg -3'
miRNA:   3'- aC-GCGCGA-----UGCUGaCGGCGuGCcUGC- -5'
23839 3' -59.2 NC_005261.1 + 43365 0.66 0.784192
Target:  5'- gGUGcCGCUGCGGCggcaucgGCCuCGCGGugcCGg -3'
miRNA:   3'- aCGC-GCGAUGCUGa------CGGcGUGCCu--GC- -5'
23839 3' -59.2 NC_005261.1 + 110532 0.66 0.784192
Target:  5'- gGgGCGCaggAgGGC-GCgCGCACGGACc -3'
miRNA:   3'- aCgCGCGa--UgCUGaCG-GCGUGCCUGc -5'
23839 3' -59.2 NC_005261.1 + 23175 0.66 0.784192
Target:  5'- gGCGCGCcggggGCGACagcgagcgcGCCGCG-GGGCc -3'
miRNA:   3'- aCGCGCGa----UGCUGa--------CGGCGUgCCUGc -5'
23839 3' -59.2 NC_005261.1 + 81721 0.66 0.784192
Target:  5'- cGCGCGCagcaGCGGCacgcGuCCGCaguggaagACGGACGc -3'
miRNA:   3'- aCGCGCGa---UGCUGa---C-GGCG--------UGCCUGC- -5'
23839 3' -59.2 NC_005261.1 + 79820 0.66 0.784192
Target:  5'- aUGCGCGCgGCGGCgcggcgGCCaGCGCa-GCGc -3'
miRNA:   3'- -ACGCGCGaUGCUGa-----CGG-CGUGccUGC- -5'
23839 3' -59.2 NC_005261.1 + 75147 0.66 0.784192
Target:  5'- aGCGCcCccugGCGACgcGCgGCAUGGACu -3'
miRNA:   3'- aCGCGcGa---UGCUGa-CGgCGUGCCUGc -5'
23839 3' -59.2 NC_005261.1 + 73392 0.66 0.783287
Target:  5'- cGCGCGCgugcagcaccaggUACGGg-GCCGCGaacCGGGCc -3'
miRNA:   3'- aCGCGCG-------------AUGCUgaCGGCGU---GCCUGc -5'
23839 3' -59.2 NC_005261.1 + 132823 0.66 0.775086
Target:  5'- cUGCGCGaCUucgcuuucguCGACgcgGCCgucuacacGCACGGGCa -3'
miRNA:   3'- -ACGCGC-GAu---------GCUGa--CGG--------CGUGCCUGc -5'
23839 3' -59.2 NC_005261.1 + 31885 0.66 0.775086
Target:  5'- cGCGCGCgcCGAg-GCCGCuuACGcGCGg -3'
miRNA:   3'- aCGCGCGauGCUgaCGGCG--UGCcUGC- -5'
23839 3' -59.2 NC_005261.1 + 124248 0.66 0.775086
Target:  5'- cGCGgGCa--GGC-GCCGCGCGG-CGc -3'
miRNA:   3'- aCGCgCGaugCUGaCGGCGUGCCuGC- -5'
23839 3' -59.2 NC_005261.1 + 42682 0.66 0.775086
Target:  5'- gGC-CGCcgcCGGCaGCCGCGCGGcCGc -3'
miRNA:   3'- aCGcGCGau-GCUGaCGGCGUGCCuGC- -5'
23839 3' -59.2 NC_005261.1 + 52667 0.66 0.775086
Target:  5'- cGCGCGCacuucgaGCGGgccCUGCU-CGCGGGCGc -3'
miRNA:   3'- aCGCGCGa------UGCU---GACGGcGUGCCUGC- -5'
23839 3' -59.2 NC_005261.1 + 37226 0.66 0.775086
Target:  5'- cGCGgGCUugcGCGGC-GCgGCGCguGGACa -3'
miRNA:   3'- aCGCgCGA---UGCUGaCGgCGUG--CCUGc -5'
23839 3' -59.2 NC_005261.1 + 42804 0.66 0.775086
Target:  5'- aGCGUGCagACGuccGCgGCCGCGcCGGcCGg -3'
miRNA:   3'- aCGCGCGa-UGC---UGaCGGCGU-GCCuGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.