miRNA display CGI


Results 1 - 20 of 737 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23844 3' -60.9 NC_005261.1 + 101085 0.66 0.745111
Target:  5'- gCCCGC--GGCCGCCuGCaGcGCGGCc- -3'
miRNA:   3'- -GGGCGuuCCGGUGG-CGgCuUGCCGcc -5'
23844 3' -60.9 NC_005261.1 + 32465 0.66 0.745111
Target:  5'- cCCCGgGcacggacucGGGCUuCCcgggGCCGGcgACGGCGGc -3'
miRNA:   3'- -GGGCgU---------UCCGGuGG----CGGCU--UGCCGCC- -5'
23844 3' -60.9 NC_005261.1 + 100379 0.66 0.745111
Target:  5'- aCCG--AGGCCgccuccaccacGCCGCCGuuguccAGCGGgGGg -3'
miRNA:   3'- gGGCguUCCGG-----------UGGCGGC------UUGCCgCC- -5'
23844 3' -60.9 NC_005261.1 + 101772 0.66 0.745111
Target:  5'- gCCCGCcuccaGCgCGCgUGCCGccCGGCGGg -3'
miRNA:   3'- -GGGCGuuc--CG-GUG-GCGGCuuGCCGCC- -5'
23844 3' -60.9 NC_005261.1 + 45953 0.66 0.745111
Target:  5'- gCCGCcAGGgCGCCGuuGAGCauGCGc -3'
miRNA:   3'- gGGCGuUCCgGUGGCggCUUGc-CGCc -5'
23844 3' -60.9 NC_005261.1 + 52854 0.66 0.745111
Target:  5'- uCCCacgugGCGAGuCCAauagCGCCcgaguGAGCGGCGGg -3'
miRNA:   3'- -GGG-----CGUUCcGGUg---GCGG-----CUUGCCGCC- -5'
23844 3' -60.9 NC_005261.1 + 13940 0.66 0.745111
Target:  5'- gUCGCGuugcGGCCcaGCCGCgCGGaaACGcGCGGu -3'
miRNA:   3'- gGGCGUu---CCGG--UGGCG-GCU--UGC-CGCC- -5'
23844 3' -60.9 NC_005261.1 + 38734 0.66 0.745111
Target:  5'- gCCCGCAgagcccGGGCCcgcGCCagaGCCGGACc-CGGa -3'
miRNA:   3'- -GGGCGU------UCCGG---UGG---CGGCUUGccGCC- -5'
23844 3' -60.9 NC_005261.1 + 97030 0.66 0.745111
Target:  5'- gCgCGCccGGCCGCCcacauccacaggGCgGGggGCGGCGGg -3'
miRNA:   3'- -GgGCGuuCCGGUGG------------CGgCU--UGCCGCC- -5'
23844 3' -60.9 NC_005261.1 + 20871 0.66 0.745111
Target:  5'- gCCGCGGgccGGCCAUCGCC-AGCucGUGGc -3'
miRNA:   3'- gGGCGUU---CCGGUGGCGGcUUGc-CGCC- -5'
23844 3' -60.9 NC_005261.1 + 37002 0.66 0.745111
Target:  5'- gCCCGC-GGGCUG-CGCgGGGCcaguuugcgggGGCGGg -3'
miRNA:   3'- -GGGCGuUCCGGUgGCGgCUUG-----------CCGCC- -5'
23844 3' -60.9 NC_005261.1 + 6058 0.66 0.745111
Target:  5'- uCCCaaaGGGGCC-CCucgucCCGAcgGCGGCGGc -3'
miRNA:   3'- -GGGcg-UUCCGGuGGc----GGCU--UGCCGCC- -5'
23844 3' -60.9 NC_005261.1 + 47287 0.66 0.745111
Target:  5'- gCCGCGu-GCCACUGUgCGAGCacgagcauGGCGGc -3'
miRNA:   3'- gGGCGUucCGGUGGCG-GCUUG--------CCGCC- -5'
23844 3' -60.9 NC_005261.1 + 107888 0.66 0.744183
Target:  5'- gCCCGCGGcccgcuuguccgcGGCCGCgGCCu--CGGCc- -3'
miRNA:   3'- -GGGCGUU-------------CCGGUGgCGGcuuGCCGcc -5'
23844 3' -60.9 NC_005261.1 + 130295 0.66 0.744183
Target:  5'- gCCCGCAcaGCCACCcaaccaGCCGcugcagcgccaugGACGGCc- -3'
miRNA:   3'- -GGGCGUucCGGUGG------CGGC-------------UUGCCGcc -5'
23844 3' -60.9 NC_005261.1 + 52434 0.66 0.741393
Target:  5'- gUCCGCGuccaGGGCCACgagguccccggCGCgCGucaggaugcgguuGCGGCGGc -3'
miRNA:   3'- -GGGCGU----UCCGGUG-----------GCG-GCu------------UGCCGCC- -5'
23844 3' -60.9 NC_005261.1 + 91408 0.66 0.741393
Target:  5'- gCCCgGCGAGGacguggagcgcgaCGCCGCC--GCGGUGa -3'
miRNA:   3'- -GGG-CGUUCCg------------GUGGCGGcuUGCCGCc -5'
23844 3' -60.9 NC_005261.1 + 39963 0.66 0.739529
Target:  5'- cCUCGCGcAGGCUcagcggguugcgcgcGCCGCCG-GCGuGCGu -3'
miRNA:   3'- -GGGCGU-UCCGG---------------UGGCGGCuUGC-CGCc -5'
23844 3' -60.9 NC_005261.1 + 30234 0.66 0.739529
Target:  5'- aCCGU--GGCC-CCGCUGGcgcgguacucgacgcGCGGCGcGg -3'
miRNA:   3'- gGGCGuuCCGGuGGCGGCU---------------UGCCGC-C- -5'
23844 3' -60.9 NC_005261.1 + 59135 0.66 0.735791
Target:  5'- aCCGacucAGGCCggcgcGCC-CCGGGCGcGCGGc -3'
miRNA:   3'- gGGCgu--UCCGG-----UGGcGGCUUGC-CGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.