miRNA display CGI


Results 1 - 20 of 314 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23849 5' -59.1 NC_005261.1 + 84961 0.65 0.812673
Target:  5'- -cCGCCGagGCGuCGGGCgcguccgcgaugCGCCGGCGc -3'
miRNA:   3'- cuGCGGC--UGCuGCUCGa-----------GCGGCUGCu -5'
23849 5' -59.1 NC_005261.1 + 116632 0.66 0.809265
Target:  5'- -cCGCCGACGA-GGGCgaggcccgcgcgccCGCCGcCGAc -3'
miRNA:   3'- cuGCGGCUGCUgCUCGa-------------GCGGCuGCU- -5'
23849 5' -59.1 NC_005261.1 + 116479 0.66 0.806692
Target:  5'- cGGCGCgGGCGggGCGGGCgcgcgguauaaagagCGCCGccGCGGc -3'
miRNA:   3'- -CUGCGgCUGC--UGCUCGa--------------GCGGC--UGCU- -5'
23849 5' -59.1 NC_005261.1 + 61160 0.66 0.805832
Target:  5'- cGGCGCCGccuCGACGGcCUCuucgugGCCGuCGAg -3'
miRNA:   3'- -CUGCGGCu--GCUGCUcGAG------CGGCuGCU- -5'
23849 5' -59.1 NC_005261.1 + 105403 0.66 0.805832
Target:  5'- cGCGCCGcuCGACGuagGGCUCGUCGuCc- -3'
miRNA:   3'- cUGCGGCu-GCUGC---UCGAGCGGCuGcu -5'
23849 5' -59.1 NC_005261.1 + 17649 0.66 0.805832
Target:  5'- cGAgGCCGAUGAgGAugGCgCGCCGcgugGCGGg -3'
miRNA:   3'- -CUgCGGCUGCUgCU--CGaGCGGC----UGCU- -5'
23849 5' -59.1 NC_005261.1 + 111669 0.66 0.805832
Target:  5'- cGCGCCGcggUGGCG-GCguaCGUCGGCGAu -3'
miRNA:   3'- cUGCGGCu--GCUGCuCGa--GCGGCUGCU- -5'
23849 5' -59.1 NC_005261.1 + 101410 0.66 0.805832
Target:  5'- aGCGCCGcuugcgucACGACGucGGC-CGCCGagGCGGc -3'
miRNA:   3'- cUGCGGC--------UGCUGC--UCGaGCGGC--UGCU- -5'
23849 5' -59.1 NC_005261.1 + 127489 0.66 0.805832
Target:  5'- aGACGCUGGCGGCu-GCcUGCCgGGCGu -3'
miRNA:   3'- -CUGCGGCUGCUGcuCGaGCGG-CUGCu -5'
23849 5' -59.1 NC_005261.1 + 112591 0.66 0.805832
Target:  5'- gGGCGUCG-UGugGAcGCUCuUCGACGAc -3'
miRNA:   3'- -CUGCGGCuGCugCU-CGAGcGGCUGCU- -5'
23849 5' -59.1 NC_005261.1 + 15953 0.66 0.805832
Target:  5'- --aGCCGGgGGCGAGUg-GCgGGCGGg -3'
miRNA:   3'- cugCGGCUgCUGCUCGagCGgCUGCU- -5'
23849 5' -59.1 NC_005261.1 + 95765 0.66 0.805832
Target:  5'- gGGCGCCGGgagccuCG-CGcGCUgCGCCGGCGc -3'
miRNA:   3'- -CUGCGGCU------GCuGCuCGA-GCGGCUGCu -5'
23849 5' -59.1 NC_005261.1 + 70565 0.66 0.805832
Target:  5'- gGGCGCCG-CGAaGAGCUCgGgCG-CGAg -3'
miRNA:   3'- -CUGCGGCuGCUgCUCGAG-CgGCuGCU- -5'
23849 5' -59.1 NC_005261.1 + 52965 0.66 0.805832
Target:  5'- aGCGCCG-CGcCGGuGCggCGCCGGCa- -3'
miRNA:   3'- cUGCGGCuGCuGCU-CGa-GCGGCUGcu -5'
23849 5' -59.1 NC_005261.1 + 61079 0.66 0.805832
Target:  5'- -cUGCCGGCGcucACGggcAGCUCGgCCGcCGAg -3'
miRNA:   3'- cuGCGGCUGC---UGC---UCGAGC-GGCuGCU- -5'
23849 5' -59.1 NC_005261.1 + 121079 0.66 0.805832
Target:  5'- cGGCGCCGGCGGCcgccAGCgccuccagGCCGuGCGGg -3'
miRNA:   3'- -CUGCGGCUGCUGc---UCGag------CGGC-UGCU- -5'
23849 5' -59.1 NC_005261.1 + 106912 0.66 0.80497
Target:  5'- cGCGCCG-CGGCGcGCUgcagggcCGCCaGCGAc -3'
miRNA:   3'- cUGCGGCuGCUGCuCGA-------GCGGcUGCU- -5'
23849 5' -59.1 NC_005261.1 + 68735 0.66 0.803242
Target:  5'- gGGCGCCGGCGGgaagaagcgcccgcCGGGg-CGCCG-CGGa -3'
miRNA:   3'- -CUGCGGCUGCU--------------GCUCgaGCGGCuGCU- -5'
23849 5' -59.1 NC_005261.1 + 130712 0.66 0.802375
Target:  5'- -uCGCCGAgGACGucaccuucgcgcuGC-CGCCGACa- -3'
miRNA:   3'- cuGCGGCUgCUGCu------------CGaGCGGCUGcu -5'
23849 5' -59.1 NC_005261.1 + 97741 0.66 0.797146
Target:  5'- --gGCUGGCaggggcggGGCGGGCUCGgCGGCGc -3'
miRNA:   3'- cugCGGCUG--------CUGCUCGAGCgGCUGCu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.