miRNA display CGI


Results 1 - 20 of 1000 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23850 5' -62.6 NC_005261.1 + 127213 0.66 0.632583
Target:  5'- aGCgGcGCGCGGCUuaaGCCGCGcgcgucgaaaaAGCCu -3'
miRNA:   3'- gCGgC-UGCGCCGGcugCGGCGU-----------UCGG- -5'
23850 5' -62.6 NC_005261.1 + 52475 0.66 0.631609
Target:  5'- uGCgGuuGCGGCggcaucggcugcaCGACGCCGCcuGUCc -3'
miRNA:   3'- gCGgCugCGCCG-------------GCUGCGGCGuuCGG- -5'
23850 5' -62.6 NC_005261.1 + 107941 0.66 0.631609
Target:  5'- uCGCCGccacguaguccguGCGCGGCCGcgGgGCCauGCAguGGCg -3'
miRNA:   3'- -GCGGC-------------UGCGCCGGC--UgCGG--CGU--UCGg -5'
23850 5' -62.6 NC_005261.1 + 76684 0.66 0.631609
Target:  5'- uCGCCGACGacgacgcCGGCCuguucuucgucGGCGUCGuCAAcuGCCc -3'
miRNA:   3'- -GCGGCUGC-------GCCGG-----------CUGCGGC-GUU--CGG- -5'
23850 5' -62.6 NC_005261.1 + 13340 0.66 0.629659
Target:  5'- uCGCgCGGCcaGCGGUCGGCGgaggcugggcggcaCCGCucguacAGCCg -3'
miRNA:   3'- -GCG-GCUG--CGCCGGCUGC--------------GGCGu-----UCGG- -5'
23850 5' -62.6 NC_005261.1 + 73119 0.66 0.629659
Target:  5'- aGCCcGCGUccgcgcgguccccgGGCCGggcucGCGCCGcCAGGCg -3'
miRNA:   3'- gCGGcUGCG--------------CCGGC-----UGCGGC-GUUCGg -5'
23850 5' -62.6 NC_005261.1 + 122361 0.66 0.626735
Target:  5'- gGCCGcggcucGCGCGGCCccaccgcggccugggGGCGCUuGcCAAGCUu -3'
miRNA:   3'- gCGGC------UGCGCCGG---------------CUGCGG-C-GUUCGG- -5'
23850 5' -62.6 NC_005261.1 + 100981 0.66 0.622836
Target:  5'- gCGCCcaGCGCGucGCCGcGCuCCGCcAGCCg -3'
miRNA:   3'- -GCGGc-UGCGC--CGGC-UGcGGCGuUCGG- -5'
23850 5' -62.6 NC_005261.1 + 65784 0.66 0.622836
Target:  5'- -aCCGAcCGCGGCgGGaacauCCGCGGGUCg -3'
miRNA:   3'- gcGGCU-GCGCCGgCUgc---GGCGUUCGG- -5'
23850 5' -62.6 NC_005261.1 + 3343 0.66 0.622836
Target:  5'- gCGCCG-CgGCGcCCGGCGC-GCcGGCCu -3'
miRNA:   3'- -GCGGCuG-CGCcGGCUGCGgCGuUCGG- -5'
23850 5' -62.6 NC_005261.1 + 19761 0.66 0.622836
Target:  5'- gCGCgGGCGCGGgccCCGucgccucgaacACGCgGCccuccGAGCCg -3'
miRNA:   3'- -GCGgCUGCGCC---GGC-----------UGCGgCG-----UUCGG- -5'
23850 5' -62.6 NC_005261.1 + 118821 0.66 0.622836
Target:  5'- gCGCCcugGGCGCGGCac-UGCCGCucuGCg -3'
miRNA:   3'- -GCGG---CUGCGCCGgcuGCGGCGuu-CGg -5'
23850 5' -62.6 NC_005261.1 + 80255 0.66 0.622836
Target:  5'- aGCCGcCGCGcGCCagguACGUCucCAGGCCg -3'
miRNA:   3'- gCGGCuGCGC-CGGc---UGCGGc-GUUCGG- -5'
23850 5' -62.6 NC_005261.1 + 129533 0.66 0.622836
Target:  5'- aGgCG-CGCGGgCuACGCCGCAAGgUg -3'
miRNA:   3'- gCgGCuGCGCCgGcUGCGGCGUUCgG- -5'
23850 5' -62.6 NC_005261.1 + 13436 0.66 0.622836
Target:  5'- gCGUCGACcgggugcagGCaGGCCGGCGCCuCGGGgUg -3'
miRNA:   3'- -GCGGCUG---------CG-CCGGCUGCGGcGUUCgG- -5'
23850 5' -62.6 NC_005261.1 + 82822 0.66 0.622836
Target:  5'- aGCCGGugcCGCGcucCCG-CGCgGCAAGCg -3'
miRNA:   3'- gCGGCU---GCGCc--GGCuGCGgCGUUCGg -5'
23850 5' -62.6 NC_005261.1 + 59885 0.66 0.622836
Target:  5'- uGCCGGCG-GGCagcagcuCGUCGUAGGCg -3'
miRNA:   3'- gCGGCUGCgCCGgcu----GCGGCGUUCGg -5'
23850 5' -62.6 NC_005261.1 + 1046 0.66 0.622836
Target:  5'- gGCgGGCgGCGGCguuagCGGCGCgGgGGGCUg -3'
miRNA:   3'- gCGgCUG-CGCCG-----GCUGCGgCgUUCGG- -5'
23850 5' -62.6 NC_005261.1 + 31583 0.66 0.622836
Target:  5'- gCGCCGGacgugaGCGcGCuCGGCGC-GCAGGgCg -3'
miRNA:   3'- -GCGGCUg-----CGC-CG-GCUGCGgCGUUCgG- -5'
23850 5' -62.6 NC_005261.1 + 86992 0.66 0.622836
Target:  5'- gCGCCcuCGUGGCCcuCGUCGaAGGCCa -3'
miRNA:   3'- -GCGGcuGCGCCGGcuGCGGCgUUCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.