miRNA display CGI


Results 21 - 40 of 72 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23859 5' -63.2 NC_005262.1 + 51664 0.68 0.254149
Target:  5'- uGGCUCUccaGCGCgGCgaUCUGCUCGCGCGc -3'
miRNA:   3'- -UCGAGA---UGUGgCG--GGGCGGGCGCGUc -5'
23859 5' -63.2 NC_005262.1 + 51359 0.78 0.053813
Target:  5'- cAGCUCgGCACCGCgCCGUCCGCGaCGc -3'
miRNA:   3'- -UCGAGaUGUGGCGgGGCGGGCGC-GUc -5'
23859 5' -63.2 NC_005262.1 + 51237 0.67 0.300504
Target:  5'- cAGCUCgacgaGCGCCGCCgCGaCCUGcCGCc- -3'
miRNA:   3'- -UCGAGa----UGUGGCGGgGC-GGGC-GCGuc -5'
23859 5' -63.2 NC_005262.1 + 51204 0.66 0.329802
Target:  5'- cGCUCauccGCGaCGCCUCGCCgGCgGCAGc -3'
miRNA:   3'- uCGAGa---UGUgGCGGGGCGGgCG-CGUC- -5'
23859 5' -63.2 NC_005262.1 + 50857 0.66 0.337449
Target:  5'- uGC-CgucGCGCaCGCCCuucagCGCgCCGCGCAGg -3'
miRNA:   3'- uCGaGa--UGUG-GCGGG-----GCG-GGCGCGUC- -5'
23859 5' -63.2 NC_005262.1 + 50407 0.66 0.348368
Target:  5'- gAGCUCguggaUGCGCgCGCCCaggcgcaggauuccgUGCUgGCGCAGc -3'
miRNA:   3'- -UCGAG-----AUGUG-GCGGG---------------GCGGgCGCGUC- -5'
23859 5' -63.2 NC_005262.1 + 50151 0.67 0.300504
Target:  5'- gAGC-CUgaGCugCGCgaCCGCCUGCGCu- -3'
miRNA:   3'- -UCGaGA--UGugGCGg-GGCGGGCGCGuc -5'
23859 5' -63.2 NC_005262.1 + 50080 0.75 0.076775
Target:  5'- aGGCcgCUGCGCCGaccgaaCCCGCgCCGCGCGa -3'
miRNA:   3'- -UCGa-GAUGUGGCg-----GGGCG-GGCGCGUc -5'
23859 5' -63.2 NC_005262.1 + 49800 0.7 0.188501
Target:  5'- cGCccCUGCACCGUCCgGCCCgaucggccGCGCGa -3'
miRNA:   3'- uCGa-GAUGUGGCGGGgCGGG--------CGCGUc -5'
23859 5' -63.2 NC_005262.1 + 49552 0.67 0.286626
Target:  5'- cGGCgacGCugCGUCCUGCUCGUGCGu -3'
miRNA:   3'- -UCGagaUGugGCGGGGCGGGCGCGUc -5'
23859 5' -63.2 NC_005262.1 + 48483 0.71 0.174601
Target:  5'- uGCUCgACgGCCG-CCCGCCCauGCGCGGc -3'
miRNA:   3'- uCGAGaUG-UGGCgGGGCGGG--CGCGUC- -5'
23859 5' -63.2 NC_005262.1 + 47725 0.69 0.23211
Target:  5'- cGGCUCgccgccuguaucuggUGCGCCGCCggCCGCggcgaacccggcaUCGCGCGGg -3'
miRNA:   3'- -UCGAG---------------AUGUGGCGG--GGCG-------------GGCGCGUC- -5'
23859 5' -63.2 NC_005262.1 + 46502 0.72 0.138244
Target:  5'- gAGCaCUccgaccGCGaCGCCCCuGCCCGCGCAGc -3'
miRNA:   3'- -UCGaGA------UGUgGCGGGG-CGGGCGCGUC- -5'
23859 5' -63.2 NC_005262.1 + 46437 0.72 0.141912
Target:  5'- gGGCc---CGCCGCgCCGCCCGCGcCGGa -3'
miRNA:   3'- -UCGagauGUGGCGgGGCGGGCGC-GUC- -5'
23859 5' -63.2 NC_005262.1 + 46233 0.71 0.161204
Target:  5'- cGGCUUcgcGCGCCGCCgcggcugCCGCCuCGCGCGc -3'
miRNA:   3'- -UCGAGa--UGUGGCGG-------GGCGG-GCGCGUc -5'
23859 5' -63.2 NC_005262.1 + 43187 0.66 0.337449
Target:  5'- uGGCggauuggCUACGCaacaGCCCUGCggcgcgCCGCGCGc -3'
miRNA:   3'- -UCGa------GAUGUGg---CGGGGCG------GGCGCGUc -5'
23859 5' -63.2 NC_005262.1 + 42669 0.71 0.170174
Target:  5'- uGGCUCUGCgaGCCGUggcgCCCGCaCGCGUGGc -3'
miRNA:   3'- -UCGAGAUG--UGGCG----GGGCGgGCGCGUC- -5'
23859 5' -63.2 NC_005262.1 + 42453 0.67 0.310524
Target:  5'- cGGC-CUugGCCGCCUcgaucgccuccuggaCGUgCGCGUAGg -3'
miRNA:   3'- -UCGaGAugUGGCGGG---------------GCGgGCGCGUC- -5'
23859 5' -63.2 NC_005262.1 + 42271 0.67 0.314896
Target:  5'- cGCgagCUGCACCGCuUCCGUguacUCGCGCu- -3'
miRNA:   3'- uCGa--GAUGUGGCG-GGGCG----GGCGCGuc -5'
23859 5' -63.2 NC_005262.1 + 40448 0.66 0.361154
Target:  5'- gGGCUau-CACCGacauCCCGgCCGUGCAu -3'
miRNA:   3'- -UCGAgauGUGGCg---GGGCgGGCGCGUc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.