miRNA display CGI


Results 1 - 20 of 149 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23888 5' -57.6 NC_005262.1 + 24940 0.66 0.634429
Target:  5'- aUG-CGCAC-AUGCcGcGCggCGCGCCCa -3'
miRNA:   3'- -ACgGCGUGuUACGcC-CGaaGCGUGGG- -5'
23888 5' -57.6 NC_005262.1 + 17061 0.66 0.634429
Target:  5'- cGUCGCGCGca-CGGcGCcgauaggCGCGCCCg -3'
miRNA:   3'- aCGGCGUGUuacGCC-CGaa-----GCGUGGG- -5'
23888 5' -57.6 NC_005262.1 + 3987 0.66 0.634429
Target:  5'- cGUgGCGCc-UGCGGGCcg-GUGCCCu -3'
miRNA:   3'- aCGgCGUGuuACGCCCGaagCGUGGG- -5'
23888 5' -57.6 NC_005262.1 + 58735 0.66 0.634429
Target:  5'- cGCCGC-CGccGCGGGCcugCcCGCCg -3'
miRNA:   3'- aCGGCGuGUuaCGCCCGaa-GcGUGGg -5'
23888 5' -57.6 NC_005262.1 + 60822 0.66 0.634429
Target:  5'- gGCCGauugccCGAUGcCGGGCagCGUgaguGCCCg -3'
miRNA:   3'- aCGGCgu----GUUAC-GCCCGaaGCG----UGGG- -5'
23888 5' -57.6 NC_005262.1 + 1458 0.66 0.634429
Target:  5'- gGCUGCAUggUGCGGcacagUGCgaaACCCg -3'
miRNA:   3'- aCGGCGUGuuACGCCcgaa-GCG---UGGG- -5'
23888 5' -57.6 NC_005262.1 + 41163 0.66 0.627956
Target:  5'- aGCgCGCGCAGga-GGGCaccgccgcgaucgcgUgCGCGCCCg -3'
miRNA:   3'- aCG-GCGUGUUacgCCCG---------------AaGCGUGGG- -5'
23888 5' -57.6 NC_005262.1 + 46690 0.66 0.623642
Target:  5'- cGCCGCGCGGUggaccuccucGCGGcccgccGCgucgacgggCGCGCCUa -3'
miRNA:   3'- aCGGCGUGUUA----------CGCC------CGaa-------GCGUGGG- -5'
23888 5' -57.6 NC_005262.1 + 50501 0.66 0.623642
Target:  5'- gGCCGC-CAAUGCuGGaacCGCugUCa -3'
miRNA:   3'- aCGGCGuGUUACGcCCgaaGCGugGG- -5'
23888 5' -57.6 NC_005262.1 + 34038 0.66 0.623642
Target:  5'- cGCCGgGCGGUugagGCGGGUUagccgggaGCGCCg -3'
miRNA:   3'- aCGGCgUGUUA----CGCCCGAag------CGUGGg -5'
23888 5' -57.6 NC_005262.1 + 12478 0.66 0.623642
Target:  5'- uUGCCGCGC---GCGGa---UGCGCCCa -3'
miRNA:   3'- -ACGGCGUGuuaCGCCcgaaGCGUGGG- -5'
23888 5' -57.6 NC_005262.1 + 34770 0.66 0.617172
Target:  5'- cGCCGCuCGAgcucgGCGgaucggugaagguguGGCUUCGC-CUCa -3'
miRNA:   3'- aCGGCGuGUUa----CGC---------------CCGAAGCGuGGG- -5'
23888 5' -57.6 NC_005262.1 + 5659 0.66 0.617172
Target:  5'- aUGCCGCGCAccAU-CGGGagguacugcaccaUCGgCACCCa -3'
miRNA:   3'- -ACGGCGUGU--UAcGCCCga-----------AGC-GUGGG- -5'
23888 5' -57.6 NC_005262.1 + 30368 0.66 0.612861
Target:  5'- uUGCCGUugacgucaaACGAcgGCGGGaacgUgGCGCCUg -3'
miRNA:   3'- -ACGGCG---------UGUUa-CGCCCga--AgCGUGGG- -5'
23888 5' -57.6 NC_005262.1 + 59700 0.66 0.612861
Target:  5'- gUGCCGC-CAc-GCGGGCgcuaCGuCGCCg -3'
miRNA:   3'- -ACGGCGuGUuaCGCCCGaa--GC-GUGGg -5'
23888 5' -57.6 NC_005262.1 + 40467 0.66 0.612861
Target:  5'- gGCCGUGCAuggGcCGGGCUg-GUAUCUg -3'
miRNA:   3'- aCGGCGUGUua-C-GCCCGAagCGUGGG- -5'
23888 5' -57.6 NC_005262.1 + 33635 0.66 0.612861
Target:  5'- cGCCgGCGCAGgugucCGaGGCUgacgagCGCGCCUc -3'
miRNA:   3'- aCGG-CGUGUUac---GC-CCGAa-----GCGUGGG- -5'
23888 5' -57.6 NC_005262.1 + 33027 0.66 0.612861
Target:  5'- aGCCGCGCGAgGCGaGGUag-GCAUCa -3'
miRNA:   3'- aCGGCGUGUUaCGC-CCGaagCGUGGg -5'
23888 5' -57.6 NC_005262.1 + 8204 0.66 0.611784
Target:  5'- cGCCGCAgCGAUgauccgcGCGGGCcaugaGCugUCg -3'
miRNA:   3'- aCGGCGU-GUUA-------CGCCCGaag--CGugGG- -5'
23888 5' -57.6 NC_005262.1 + 52725 0.66 0.611784
Target:  5'- gGCCGCGC--UGCugacgaaguucacGGGCUgggGCGCCa -3'
miRNA:   3'- aCGGCGUGuuACG-------------CCCGAag-CGUGGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.